Polyodon spathula (Mississippi paddlefish): 121302619
Help
Entry
121302619 CDS
T07273
Symbol
mmp13b
Name
(RefSeq) collagenase 3
KO
K07994
matrix metalloproteinase-13 (collagenase 3) [EC:3.4.24.-]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
pspa01002
]
121302619 (mmp13b)
Peptidases and inhibitors [BR:
pspa01002
]
Metallo peptidases
Family M10
121302619 (mmp13b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M10
Hemopexin
PG_binding_1
Reprolysin_3
Reprolysin_5
Reprolysin_4
DUF4953
Peptidase_M66
Metallopep
Motif
Other DBs
NCBI-GeneID:
121302619
NCBI-ProteinID:
XP_041088557
LinkDB
All DBs
Position
30:complement(8630962..8636847)
Genome browser
AA seq
465 aa
AA seq
DB search
MRYSVLVVILNIAYSYAFPLSAEDSEKGEDNWHFAEKYLRKFYGLAPGIEGLQKSSSSMS
LVIKEMQSFFGLEVTGNLDPDTLEMMHMPRCGVPDIGEYNLFPRNLKWKTTNVTFRIVNY
TPDMKASEVDRAIHNALKVWSDVTPLVFRKLHKGTADIMIAFGSKEHGDFNPFDGPNGLL
AHAYQPGNGLGGDTHFDEDETWSTDSTGYNLFIVAAHEFGHALGLSHSEDPGSLMYPVYS
FSKGFPLSEDDVHGIQSLYGPNPNPPKVKPHPEAPKKCDPLLSFDAVTKLRGETIIFKDR
FYWRLHPQMVDVEQSLIKMTWPVLPNKVDAAYESAEKDLVYIFNGIRMWALNGYNLVEGY
PKYIHKLGLPKTVRRVDAAVQITGTGKTLLFTDEDYWSYDEYSGTMDKGYPRSIEDDFPG
VGEEIEAAFYEYGHLYLYRGPIQFQYSYTSKRVVGILRANSLLNC
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgaggtacagtgtgcttgtggttatactcaacattgcatattcttatgcattcccattg
tccgcagaggacagtgaaaaaggtgaagacaactggcattttgcagagaaatatctaagg
aaattctatggcctggcccctggaattgagggactacagaagtcctctagctccatgtca
ctggtaattaaagagatgcagtccttctttggtctggaagtaactgggaatttggaccct
gacactctagagatgatgcacatgccaagatgtggcgttcctgatattggagaatataat
ctcttccccaggaatctcaaatggaaaacaactaatgtgacattcaggattgtgaattac
accccggatatgaaagcctccgaggttgaccgagcgatccacaatgccctcaaagtctgg
agtgacgtgacaccacttgtcttcagaaagctacacaaaggcactgctgacatcatgatc
gccttcgggtcgaaagagcatggagacttcaatccatttgatgggcccaatggtctgctg
gcccatgcctaccagcctggcaatgggctggggggggacacacactttgatgaagatgag
acttggtcaacggactccactggttacaaccttttcattgttgctgctcatgaatttggc
catgctttgggtctctcccactctgaggatcccggatccctgatgtacccagtgtactca
ttcagtaaaggattccccctttcagaagacgatgtccatggaattcaatcactttatggt
ccgaacccaaatccacctaaagttaaaccgcatcctgaagcgccaaagaagtgtgatcca
ctcctgtcttttgatgccgtgacaaaactcagaggagaaacaattatcttcaaggacagg
ttttactggcgcctgcaccctcagatggtggatgtggaacagtcactgattaaaatgacc
tggccggtcctcccaaacaaagtggacgctgcatacgagtctgcagaaaaggaccttgtt
tatattttcaatggaatcaggatgtgggctctgaatggatataacctggtggaaggttac
cccaaatacattcacaagctgggtcttcctaaaactgttcggagagtcgatgcggctgtg
cagatcacaggcactggaaagactctgctttttacagacgaggactactggagttacgat
gagtacagtggaacaatggacaaaggctaccccagatctattgaagatgattttccaggt
gtcggagaagaaatagaagctgccttctatgaatatggtcacctctacctctatcgggga
cccatccagtttcaatacagctacacgtccaagcgagtggttgggattttaagagcaaac
tctttgcttaactgttaa
DBGET
integrated database retrieval system
