Polyodon spathula (Mississippi paddlefish): 121304706
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Entry
121304706 CDS
T07273
Name
(RefSeq) plakophilin-1-like
KO
K10387
plakophilin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121304706
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
pspa04812
]
121304706
Cytoskeleton proteins [BR:
pspa04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
121304706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
ARM_ARMC5
HEAT_EZ
HEAT
Adaptin_N
ZER1-like_2nd
HEAT_GCN1
Atx10homo_assoc
Arm_2
Cnd1
ARMC9_ARM
ARM_PUB
UBQLN1
Motif
Other DBs
NCBI-GeneID:
121304706
NCBI-ProteinID:
XP_041091940
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Position
39:45160..65834
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AA seq
718 aa
AA seq
DB search
MSSRNVTTTSTYFKTATVPASFPRDDSTSLALPSDKTMLSGGTLGQQRVTEQVYSTLKRN
KTTQRTESNSSKESSTQQNGFSFKMSPTTPTGSGFFSSNVNGNQYSTYSSKKQFYQQNSL
PAMKYHNNSMGFSKRQFSCNSQRESQFSPTSPVNGFQTYKTMTTSRSEPDIPQIAKSPTL
LDYQNKRHSAYRGMGMYMTMPYVNQTQGQTTANKFNSHQTTVDSGGMAVSKLTLREAVDC
LGQRDENLQYCGASFIQHFSFQEDKTKQKVYSLGGIPKLVDLLSSKSPEVQQAASGALRN
LVFKCQTNKMEVKRNNGIYEALKLLRQTDCPEIQKQLTGLLWNLSSADELKPELVRDALP
VLTEKVVVPFAGCSEEDVQLNSSLDSEIFYNATGCLRNLSSANKSDRDAMRSCRGLIDSL
VSYVQVCMSADRPDDKSVENCVCILHNLSYQLEQEAPAQFSQISSLASSPTRDLSTNDSS
SMGCFSPRSSQISQENSFAPPILEDSNPKGMGWLFNSKTMQTYLSLMGKSKKDATLEACA
GALQNITANNGIVSNVMSQTIVQKLNGLPEVSRLLKSSNPGVQKTAMSLLGNLSRNPSLQ
NVMSRQILPDITQVLTSGAHNTACSDDMMAAACHTIRNLVVSNPESAKGVMGNSVLSTLC
DLSRNGYSPKSSKAAAILLYDLWGQKELQSFFKKQGVNKNIFVNDITNSAYKTLQGVM
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagaaatgtgacaacgacgtcaacttattttaagacggcgacagtccccgcg
agtttcccccgggatgacagcacgtcgctggcgctgccttcggacaagactatgctatct
gggggtaccctcggacagcagcgcgtaacggagcaggtttacagcacgttgaagagaaac
aagacaacccagagaactgaaagcaactcctcgaaagaaagctcaacacaacagaatgga
ttcagtttcaagatgtcccccacaacgcctacaggaagtggtttcttttcaagcaatgtc
aacggaaaccaatacagcacttacagttcgaaaaaacagttttatcaacagaatagcctg
ccggctatgaaataccacaataacagcatggggttctcaaaaagacagttcagctgcaac
agccagagggagagccagttctcacccaccagcccagttaacggcttccaaacctacaag
accatgactaccagtcgaagtgagcctgatataccacagatcgccaagtcgcccacactg
ctcgactaccagaacaaacgccacagtgcgtacaggggcatgggcatgtatatgaccatg
ccctatgtaaatcaaacccaaggccaaactacagccaacaagttcaactcccatcagaca
acggtagacagcggtggcatggcagtttcgaaactcacccttcgcgaggctgtggattgc
cttgggcagagagatgagaacctgcagtactgtggcgcctctttcatccagcacttcagc
ttccaggaggacaagacaaagcagaaggtgtattctcttggtgggattcccaagctcgtg
gacctgctcagcagcaaaagccccgaggtccagcaggcagcctccggtgcgctccgcaac
ctggtcttcaaatgccagaccaacaagatggaggtgaagaggaacaacggcatctatgag
gctctgaagctactgaggcaaaccgactgcccggagatacagaaacagctcacagggctg
ctgtggaacctgtcctcggctgatgagctgaagccagagctggtcagagacgctctcccc
gtcctcactgagaaagtggtggtgcccttcgcaggctgttcagaggaagatgtccagctc
aacagcagcctggactcagagatcttttacaatgccacaggctgcctcagaaacctgagc
tcggcaaacaagagtgaccgcgacgccatgcgcagctgccggggtctgattgactctctg
gtcagctacgtccaggtctgcatgagcgctgaccgtcccgatgacaagtcagtggagaac
tgcgtttgcattctacacaacctgtcgtaccagctggagcaggaggcccctgcccagttc
agccagatcagctccctggccagctccccgacccgggacctctccaccaacgactcctcg
tccatgggctgcttcagcccacgcagcagccagatctcccaggagaactcctttgctccc
cctatcctggaggacagcaaccccaaagggatgggctggctgttcaactccaagaccatg
cagacgtacctgtcactgatgggaaagagcaagaaggatgcaacactggaggcctgtgcc
ggggcgctgcagaacatcactgccaacaacggaatagtgtccaatgtgatgagccagacc
attgtgcagaagctcaacgggctaccagaggtatcgcggctcctcaagtccagtaaccca
ggcgtccagaagactgccatgtcgctgctgggcaacctgtcccgaaaccccagcctgcag
aacgtcatgagtcgtcagatcttgcctgacatcacgcaggtcctcaccagtggagcacac
aacacggcctgctcagacgacatgatggccgcagcctgccacaccatccgcaacctcgtg
gtctccaaccctgagtcagccaagggagtaatgggcaacagtgtgctgtccacgctctgc
gacctcagcagaaacggatattccccgaaatccagcaaagccgccgccatcctgctgtat
gacctctgggggcagaaggagcttcagagtttctttaaaaagcaaggggtgaacaaaaat
atctttgtgaatgacatcaccaattcagcctataaaaccctgcagggggtgatgtga
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