Polyodon spathula (Mississippi paddlefish): 121306900
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Entry
121306900 CDS
T07273
Name
(RefSeq) nuclear pore membrane glycoprotein 210-like isoform X1
KO
K14314
nuclear pore complex protein Nup210
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121306900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121306900
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121306900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_NUP210_2nd
Ig_NUP210_15th
Ig_NUP210_3rd
Ig_NUP210_7th
Ig_NUP210_1st
Ig_NUP210_4th
Ig_NUP210_6th
Ig_NUP210_9th
NUP210_Ig
Big_2
Motif
Other DBs
NCBI-GeneID:
121306900
NCBI-ProteinID:
XP_041094847
LinkDB
All DBs
Position
51:481591..508093
Genome browser
AA seq
1898 aa
AA seq
DB search
MSLPLPPLSLYLSCFCCLNVLFSAETSKLNAPKLLLPYSAAAKVNFTLEAEEGCYAWRSS
RVAAVLVEPVFVNGTPCSRSAVVSALSTQPSRLASGIVAEEMVTGRVLRCSVVVDVICSI
EIVSTTRELYVDDSPLELSVRALDQEGNTFSSLAGLAFHWSTVKDPETETAPDSPDRVRL
VWFADAEYSPPEYILSMEAEGKQGDVVLVSGLRSGPAKLRVQINEPGYKKVPAAMVRLLI
LENILLSPPQDLYLLVGAHAYYRVWRRQQGRDTDVQLPSPEFGLQLQGQLVSEAGDPKQP
VATIEQESVRVTAVQPGQASLILHYSNIHMQAASQLPNCTIFVVEASFLTLRVHPGEHWV
LETGRRYEVTVQVYDIAGNRIHLSDNIKIVHETPVEYLDRLASAENGSWVHARTLQPGAT
AVRATLVSVTAQNGTALSLNPPISHLQEVHIYSPIVMIPKVLAFPWQPNNGIYRYQIQVE
GGSGNFSWSSSNLSVSTVTVKGAVLAGLELGASVIRARDSQNPTHYGETTVYVLRPGFIH
LAPHQADVVLGGTLDLPFAVLGLREPPDQEPLPFTDCSLLRLLLHPDRKGVFTLLHGRLH
PGPEFCSGFRLEAVSPGHVLLTASSLPEQEPFSASATIATYRPLQPLVLEALVTPGSDRV
LLFEGGPRPWILVPSRFYTELRPDSEQGGVWIVQLGQPEVQKNQHGYRVTCTSLGEEWLT
FRIGNLPGMLNPRPAEEAVQVKLVCALPASLALSPLLQDPVPSQPCPILQHHRQTVPISS
SRDTVLELAAFDQHRTKFDNFSSLLIEWSSSNQSLLSLPTERGLETELRADEKGQLKMHG
LQVIKPQRRTGSCTVTASFMSYRHGTSDTSAGSAKGSCTLFFVEQMSGLTLCSPRQDISL
PPTSISLELLLVNDVFLQQKSMTLYNHRDVLENLTLTQGSGHFLVRVVDREVVEVTMLEA
KNIVQVSPLKPGSSLLYVYDLCLKSSEPAGVALHVSDISDFELEFIHNMEVKKPSPLNVR
VLDSSRLPFHSRYFRLMELRVHTAPSIVTVEKIADRDEVTSSYVLQAVSLGETEVFVTAR
ERSGRRLSSSHRHTEVFPRFRLLPRRMTLIIGNSRQVMSEGGPHPWSHIHFSVSSETVAA
VTEAGLVTGVSLGSVRVTGAVRTVHQSTGATIEISKDEIEVEVRELRAVRIHAPVTRLRT
GTEMPVYVMGSSSLQTPMSFANSWQGLTFHWSQSKRDVLDLVPRHWQTNVKLTPEMNFAM
LVRTRTAGRTTLRVTVLPRNHSQPAGVPEELSDEIQILVFQKASLPIGNLDPILMSPNSN
FQLETSKDGVGVIQYQVEPCLQGPAVVSVDRAGVLRAHAATGSAILEVTCMEQFGVNQTI
LVGVKVAPISYLLISSAPELHTADGESLSGFPLGMSLAFQVQFYDCVGDKFRAENTGLGF
TSNRDDLLQLGSETLTHTFTAQTTSAGVTVLEAWDPKHPNMADYIAVPTQNAIAPELSGP
LTAGDLVCFRTALVNQDGETGSWHVSPSHVLQIDSATGAAAVKDSGTLVVYYKLSERLQT
SREVTVRAADSVALTPPADRCLTNSPGSSEYRVTVSIGATASPLKGPCSPVQLSAVHSAL
RPELDLSCSLQFGGPCVESVLQQAFRVSPHYSTSTGQYSCVVATLPQSDSLLRTLSTASA
SVLLSASLRWLPQDRPASASIPFQPAFHVSRSALVLNSTHPSAELPVLGSPALLHSLQVW
SDGLDVTVGDPVQSLQVPGLLLFSVFPSSASVFQQGADSTARLHLTSAVTGQHVTVGVTV
RSDDRAVSGPGWDKCQDSGLFWQLTGSSHLLLFTGFAMLAGTAAVFIVYNAAVNRVRTTL
LGYIPTASPHLSGDGLYQRVPYPEPPNQRRRHRWLWST
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccctctccccccgctgagtttgtacttgtcgtgcttttgttgtttaaatgtt
ttattttcagccgaaacgtcgaaattaaacgcgcccaaactcctgctgccctactccgcg
gcagcgaaggtgaatttcactctggaggccgaagaagggtgctatgcatggcggtcatct
cgtgtggcggcagtgcttgtggaacccgtgtttgtgaacgggaccccctgctctcggagt
gctgtggtctctgccctctccacccagcccagcagactggccagcgggatcgtggcggag
gagatggtgacgggtcgggttctgcgctgcagtgtcgtggtggatgtgatctgcagcatt
gagattgtctccacgacccgggaactctacgtggacgactctcccttagaactgtctgtc
agagccctggaccaggaggggaacaccttcagcagcctggcagggctggctttccattgg
agcacagtgaaggaccccgagactgagacagcccccgactcccctgacagagtcaggttg
gtgtggtttgccgatgcagagtactcccctcccgagtacatcctcagcatggaggccgag
gggaagcagggggatgtagtgctggtgtcgggcctgcggagcggtcctgccaagctgagg
gttcaaatcaacgagcccggctacaagaaagttcccgctgcgatggtgcgattgctcatc
ctggagaatatcctgctcagccccccccaggacctctacctgctagtgggggcacacgcc
tactacagagtgtggaggagacagcaggggagagacactgatgtccagctgccctccccg
gagtttgggctgcagctgcagggtcagctggtcagcgaggccggagaccccaagcagccc
gtggccacgatcgagcaggagagtgtgagagtgaccgctgtgcagccaggccaggccagc
ctcatcctgcactacagcaatatccacatgcaggccgcctctcaactcccgaactgcacc
atcttcgtagtggaggccagctttctcactctgcgcgtgcaccctggggagcactgggtg
ctggagacggggcgtcgatatgaggtcacagtgcaggtctatgacatcgctggcaacaga
atccacctgtctgataatataaagatcgtccacgaaaccccagtggaatacttggacagg
ctggcgtccgcggagaatgggtcctgggtccatgccaggaccctgcagcccggagccacg
gcggtcagagccacgctggtgtctgtcacagcgcagaatggtacagccctatccctgaat
cctccaatcagccacctgcaggaagttcacatctacagccccatcgttatgattcccaag
gttctggcatttccttggcaaccaaacaatgggatctaccggtatcaaatccaggtggag
ggtggcagtggtaatttctcctggtcctcctctaacctgagcgtttccacggtgacggtg
aagggggcggtgctggcgggccttgagctgggggccagtgtgatccgggcccgggattcc
cagaacccaacccactacggagagaccacggtgtatgtgctgaggccagggttcatacac
ttggctccccaccaggctgacgtggtgctgggggggacgctggacctgcccttcgctgtg
ctgggactgagggagcccccggaccaggagcccctccccttcacagactgctccctgctg
cgcctgctcctgcacccggacaggaagggggtcttcactttgctgcatggccgtttacac
ccgggtcctgagttctgcagcgggtttcggctggaggcggtcagtccgggccacgtcctg
ctgactgccagctctctaccggagcaggagcccttcagcgccagcgcaaccatcgccacc
tacaggccactgcagccgctggttctggaggctctggtcaccccgggctctgatcgggtt
ctgctgttcgaaggtgggccccggccctggatcctggtgccgtctcgattctacacagaa
ctgcgtccggactcggagcaggggggggtctggatcgtgcagctgggccagcccgaggtc
cagaagaaccagcacggctaccgggtcacctgcaccagcctgggggaagagtggctgaca
ttccggattgggaacctgccggggatgttgaacccgcgtcccgctgaggaggccgtgcag
gtgaagctggtgtgcgccctgcccgccagcctggccctctctcccctgctgcaggatccc
gtccccagccagccctgcccaatcctccagcaccaccggcagaccgttcctatctccagc
tccagggacacagtgctggagctggctgcctttgaccagcacaggaccaagtttgacaac
ttcagctccctgctgatcgagtggagctcgtccaaccagagcctgctgagcctccccacg
gagaggggcctggagacggagctccgagccgacgagaaggggcagctcaagatgcacgga
ctccaggttatcaagccgcagcgtaggacagggtcctgcactgtgacagcgagcttcatg
agctaccggcacggcaccagcgacaccagcgcgggcagcgccaaggggagctgcaccctg
ttctttgtagagcagatgtctggattaaccctttgctctccccggcaggacatctccctg
ccccccacctccatctccctggagctgctcctggtcaacgacgtgttcctgcagcagaag
agcatgactctgtacaaccacagagacgtgctggagaacttgaccctgacgcagggctca
ggtcacttcctggtcagggttgtggacagagaggtggtggaggtgaccatgctggaagca
aagaacattgtgcaggtgtctcctctcaaacccggctcctctctcctctatgtttatgac
ctgtgcttgaagtcctccgagcctgcaggggtcgccctgcacgtgtcggacatctctgac
ttcgagctggagttcatccacaacatggaggtgaagaagccctctcctctcaatgtcagg
gtcctggattcctcacggctccccttccacagcagatacttccgcctcatggagctgcga
gtgcacacggccccctcgatagtcactgtggagaagatcgcggaccgtgacgaggtcacc
tccagctacgtgctccaggccgtgtctctcggggagaccgaggtgttcgtgacagcgagg
gagcgatcggggcgcaggctgagctcctcacatcggcacacagaggtcttccctcggttc
agactgttgccccggagaatgactctgatcattggcaacagcaggcaggtgatgtcagag
ggagggccgcacccctggtctcacatccacttctccgtcagcagcgagacggttgccgcg
gtgacggaggcagggctggtgacgggcgtgtccctggggagtgtgagagtgacgggggcg
gtgaggaccgtccaccagagcacaggagccacgatcgagatctcgaaggatgagattgag
gtggaggtgagggagctgagagccgtcaggatccacgcaccagtcactcgactccggacc
ggaacagagatgcctgtgtatgtgatgggcagcagcagcctgcagaccccaatgtccttc
gctaattcctggcaagggctgactttccattggtcccagagcaaacgggacgtcctggac
ctggtaccccggcactggcagacgaatgtcaagctgacccctgagatgaactttgccatg
ctggtgcgcaccaggacagcgggccggaccaccctgcgcgtgacggtgctgccgcgcaac
cacagccagccagcgggggtgccagaggagctgagcgacgagatacagatcctggtgttc
cagaaagcctccctccccatcggcaacttggatcccatactcatgtctcccaactccaac
tttcaactggaaaccagcaaggacggagtgggtgtgatccagtaccaggtggagccctgt
ctgcagggcccggctgtggtcagcgtggacagggcaggggtgctgagggctcatgcagcc
acggggtcagcgatcctagaggtcacctgcatggagcagtttggggtcaaccagaccatc
ctcgtcggagtcaaggtggccccgatttcttacctgctgatcagctctgctccagagctc
cacaccgctgacggggagagtctgtcgggattcccgctgggaatgagcctcgcattccag
gtccagttctacgactgcgtgggagacaagttccgagcggaaaacaccggactcgggttc
acctccaacagggatgatctccttcagttgggctcagagactctcacacacaccttcaca
gctcagaccacgagcgcgggggtcaccgtgctggaggcctgggaccccaaacaccccaac
atggcggattacatcgccgtgccgacccagaacgccatcgcgcccgagctgagcggcccg
ctgaccgccggggacctcgtctgcttcagaaccgcgctggtgaaccaggacggtgagacg
ggctcgtggcacgtctcccccagccacgtcctccagatcgactctgccacgggggcggct
gcagtgaaggattctgggacattggtggtgtactacaagctgagcgagaggctgcagacc
tccagagaggtgacggtcagggctgctgacagtgttgcactcaccccccccgcagaccgc
tgtctcaccaactcccccgggagctccgagtacagagtgactgtgagcatcggggccact
gccagccctctcaaaggcccctgcagtcctgtccagctgtctgctgtccactctgcgctc
agaccagagctggacctgtcctgctccctccagttcggtggcccgtgtgtggagtccgtc
ctgcagcaggcattcagagtgtcccctcactacagcacgagcaccggtcagtacagctgc
gtcgtggccacgctcccccagtccgacagcctcctcaggactctctccacagcctctgcc
tctgtcctcctgtctgcctccctgcgatggctcccccaggacaggcctgcctctgcatcc
atccccttccagcctgccttccacgtcagccggagcgccctggtgctgaacagcacgcac
cccagcgccgagctccctgtgctgggctccccggccctgctgcactccctgcaggtgtgg
tcagacggtcttgatgtcacggtgggtgatcctgttcagtctctgcaggttccaggtctc
ctgctcttctccgtgttccccagcagtgcttcagtgttccagcagggggcagactccacg
gccaggctgcacctgaccagcgcggtgacggggcagcacgtcactgtcggggtcacagtg
cggagtgacgatcgtgcagtgtccgggcccggctgggataagtgccaggattctgggttg
ttctggcagctcacaggctcctcccacctcctcctcttcactgggtttgccatgctcgcc
gggacggccgccgtcttcatagtctacaacgccgcagtgaatcgcgtgaggaccacgctg
ttgggctacatcccgacggcgagcccacacctctcgggtgatggattgtatcagagggtc
ccctatcctgaacccccaaaccagaggcgccgacatcgctggctgtggagcacctag
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