Polyodon spathula (Mississippi paddlefish): 121313157
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Entry
121313157 CDS
T07273
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121313157 (smchd1)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121313157 (smchd1)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121313157 (smchd1)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121313157 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_5th
Ig_SMCHD1_8th
Ig_SMCHD1_7th
Ig_SMCHD1_6th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
121313157
NCBI-ProteinID:
XP_041101320
LinkDB
All DBs
Position
3:51676315..51762859
Genome browser
AA seq
2042 aa
AA seq
DB search
MEAGSGKHSSKNSMNKPSPIPVVSTDGAGPSLLRRTVFVFDCRLERNNADSNEKKVESGG
ISFLEFRKIVCQVFGIAPEENFVITTTARKSITDHSFGEIQDGSTLYLLQSVDQILPSAI
RERIEFLPHYDTLVKSGMYEYYASEGQKSLPFAFAELIDNSLSATSHISGVRTIDLRFLF
DESQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRRDQEFESDHSGYVRPAPVARSLNS
DISYFGVGGKQAVFYIGQATRMISKPASSVDAHELLLSKEDFEKKEKNKEAIYSGFIRNR
KPGDSSHITSDDERFLHSLVKEEKNKESFTAVVITGIHTDHMQYLKNNFHLWTRELAHVY
HYYIHGPKGSDAKASIKNTGPVQKIDIQISMFEKGKVPKVINLRDIKDDMQTLYNSSSAD
SFEFVTHVDGDGVVEGLIRYHPFLYDRETYPEDPVGLSSKSDDDDEDSMLSEKGGRGKRP
IFECFWNGRLIPYTTVEDFEWCSTSKKRGTISEECLNRISGVLFTNDKFEVSTNKLTFMD
LELRLKDKDTIFTRVINGQEQRVKIYREFALWLKECHEKFDKQIKFSGFKGIMTRTDIAA
KRMQSPWAIFTSVEWDGKTYKAGQMVKTTKTAPILYGSIVRFLLYGDHDGDVYATGGVVQ
IAVEPQALYDEVKTIPISKLDRNAVASVIKKYVEDEMARLPDRLSVTWPEGEELNQNDIR
SAGTPIGAIRIEILNKKGEAMQKLPGTSHSGSKKLLVELKVIWHSSSGDKEITSHISQHG
GKWPYWFKKMENINKLGKYTLNLQTVLNESNADTYAGRPLPSLKFEFSVIEGKAEQFSIG
TLDPPVRVGVPFNIPLELLDEFGHPTHPTLDIKPVLECSALDLSHNGTMTKKNNFIIKGV
KAKGPVNNYQGKNYIVKVILPGLKEDTQMLKMRLMPGPPHTLKVKPDSEKLIFENGTAFP
FQVEVLDEAGNTTVQPKLVVNCKFLGAPNLPVYTVDCSNTGTGILTGPVVHALKLEKDQY
VTAIFEIPSCKAVVPIEKTIKLLPSTRAAKLQIFCLEGQKAIEIKHQDEISWTAGDSLQN
LIFKMYDEGDREIIVTPALAEKIKVNWTPNINKEQLVKGLLPDVKVPTAVKDVRYCQVSF
QDDHASLDSAFSIKPIADEPKLLKASLKGVYNVRMGEELQGEIQLDITDQFGNKIQTLTS
TCVNSLGISSDGLDKSSLKVSWQENTKTILVQGIKFIPGAPGSKELCFAWREFAEYIRVN
LMAGPPAQISLVDWPEDELVVVVNGKELDKPFIVQLCDQWGNPSPEPLVKVSLVKGNNMK
IMPLPPVLKTDPNGRADFGVFTIVAPRGENQFQIRATYNKVVLEGPVVKLNVIPDQNKPV
GLSVDYDKKASFPAGGFLTVFMVSVLSEDGKPMRHVNPAAITMRMWKGQGHGSRLPASAT
VFNCNKPKENEKEDCFYFRDKVIPDRVGVYTIQFVYMVDKINMLCSDQISLNVVPNEPVK
LIPDEQPPTPVVSNIRSIASRTLVQNLTLKIMDEYNNPTCTDLDGKVVVTIKSPNRNVKE
IPQFQGKVKSVEFKLLKGCAEISNLILAENSLGVDGTEYILHFDPVIPDLKEATLAAFQL
CFMFSNDFKKQQQMTALTREKDQISQSIVAYKSLFDTTNQLVSEMKCQAQDASVKELQLK
TELNKLKVEIPQVNVVQHIEEMIKQKSAEREQILKEPRRTCTIPMAPKGNPDVLGKIAHL
AQIENNEAAKVISWHLASDMDCVVTLTTDSARQIFKDTQGRQQVLPLDSIYMKNLPLWNR
PLPHLRNGKCHFEPMGNPVFARDLLIFPENVKHCQTVFGMLLGDTIILDDLDASNSYRKE
VVKITHCPTLLTRQGDRIRSNGKFGGLQNKAPSMDKLRGMVFGSPLPPIYYTLGKQIDLL
QQYRSAVIKLGNVKEELDLQLNYLRSPEMLQKRDELNSQEKQLKDIEKKLGMTPARGTNG
SGFKPTVLDMADGSPVCTKRTRRDNSRKTFSSDEWISPPVKKLHLTSESETSDSVVKRKR
KS
NT seq
6129 nt
NT seq
+upstream
nt +downstream
nt
atggaggcgggcagcgggaagcatagcagcaaaaacagcatgaataagccttctcccatc
cctgtggtatccacagacggggccggcccttcgcttctcaggcgaacagtttttgtgttt
gactgccgcctggaacgcaataatgctgatagtaacgagaagaaagtggagagtggaggt
atctccttcctggagttcaggaaaatagtatgccaggtatttggtatagctccagaagaa
aactttgttattacaacaacagccagaaagtcaatcacagaccacagttttggtgagatt
caagatggaagtacattatacctgcttcagtctgttgatcagattttgccatcagcaata
agagagcgtattgaattccttccacactatgacacgctcgttaagagtggaatgtatgag
tattatgccagtgaaggccaaaagtctctaccttttgcctttgcagaattgatagacaat
tcactatcggcaacatcacacattagtggagtcagaactatagaccttagatttttattt
gatgaatcgcaaggtaaacctgctgtagctgtcattgataacggaagaggtatgacctct
aaacagctcaacaactgggctgtctacagattgtcaaagtttacaagaagagatcaagaa
tttgaaagtgatcattcagggtatgtacgtcccgctccagtggcccgcagtttaaatagt
gatatatcctattttggagtaggcggaaagcaagctgttttctacattgggcaagcaact
agaatgataagcaagccggcgagttctgtagatgctcatgaactacttctatctaaagaa
gactttgaaaaaaaggaaaagaataaagaggctatatacagtggtttcatcaggaacaga
aagcctggcgattcatcccacataaccagtgatgatgagaggttcctgcacagtcttgtg
aaggaagagaaaaacaaggaaagctttactgctgttgtgattactgggatccacacagat
catatgcagtatctgaaaaacaactttcatctgtggactagagagttggcgcatgtttat
cactattacattcatgggccaaaagggagtgatgcgaaagcttcaattaaaaacacaggc
cccgtccagaaaattgatattcagatctcaatgtttgagaagggaaaggttccaaaggtg
attaacctgagagacataaaggatgatatgcagactctatacaacagttcatcagcagac
agctttgagttcgtgacacatgttgatggagatggagttgtagaaggactcatccggtat
catcctttcctttatgacagggaaacctatcctgaagacccagttggcctgtcaagtaaa
tctgacgatgatgacgaagactccatgctgagtgaaaaaggaggaaggggcaaaaggccc
atatttgaatgtttttggaatggacgcttgataccttacacaactgtggaagattttgaa
tggtgctccacttcaaagaagagaggcacgatttcagaagagtgtttgaaccgtatatcg
ggtgttctcttcaccaatgacaagtttgaggttagcactaacaagctcacattcatggac
ctggagctgaggttaaaggacaaggacacaatcttcactcgggtgatcaatggacaggaa
caaagagtgaagatttacagagaatttgctctttggctgaaggaatgccatgagaagttt
gataaacagataaagttttctggtttcaaaggaataatgacaaggactgatattgcagca
aaaagaatgcagagcccgtgggcaatatttacatctgtggagtgggatggcaaaacgtac
aaagctggacaaatggtgaaaacaaccaaaactgcacccatattgtatggcagtatagtc
cggttccttctttatggggatcatgatggagatgtatatgcgactggaggagttgttcag
attgctgtggagccccaggctttgtatgatgaagtaaaaactattccgatatctaaactg
gacaggaatgctgttgcgagcgttatcaagaagtatgtagaggacgaaatggcaaggctc
ccagataggctgtctgtgacatggcctgaaggagaggagttgaatcaaaatgacatccgt
tctgctggaactcctataggtgcaattaggattgagatcttgaacaagaaaggagaagca
atgcaaaagctccctggcacaagtcacagtggatcaaagaaactgctggtagaactaaag
gtcatctggcattcttccagtggagacaaggaaataacttcacacatcagtcaacatggt
ggaaagtggccatattggtttaaaaagatggaaaatatcaacaaacttggaaagtatact
ttgaatctacagactgtattaaatgagagcaatgctgacacatatgctggaaggcctctc
ccttctctgaagtttgaattctcagtgattgagggcaaagcagaacagttttctattggt
actttggaccctcctgttcgtgtaggtgtaccttttaacattccattggagctgcttgat
gaatttgggcatcccacacacccaaccttggatatcaagccagtcctagagtgcagtgct
ctggatcttagtcacaatgggacaatgacaaaaaaaaataacttcatcattaaaggtgtg
aaagcaaagggtcccgtgaacaactatcagggaaagaactacattgtaaaagtcatcttg
cctggattgaaagaagacacacagatgttgaaaatgagactgatgcctggtcctcctcat
acactgaaagtaaaacctgattctgaaaagctaatttttgaaaatggaacagcttttcct
tttcaagttgaggtgctggatgaagcaggaaataccacagttcagccaaaattggtggtg
aattgtaagttcctaggtgcacctaacttgcctgtctacacagtggattgcagcaatact
ggcactggaatattaactggtccagttgtgcatgcattgaaactagagaaggaccagtat
gtaactgcaatatttgaaataccgagctgcaaagctgtagttccaatagaaaagacaatc
aagctgcttcccagtactcgagcagccaagctacagatcttctgtcttgagggacagaaa
gccattgaaatcaaacaccaggatgaaatcagctggacagctggggacagtctgcagaat
cttatcttcaaaatgtatgatgagggggatagagaaatcatagtgacacctgctttagca
gaaaagattaaggttaactggacccccaatattaataaggaacaactggttaagggactt
ttgcctgatgtaaaggtaccaactgctgtaaaagatgtccgttactgccaagtgtccttc
caggatgaccatgcatcactggatagtgcttttagcataaagcccattgcagacgagcca
aagctactaaaagcttcactgaaaggtgtttacaacgttcgaatgggtgaagagttacaa
ggggaaattcaattagacattacggatcagtttggaaataaaattcagacattgacatca
acttgtgtgaattccctgggaatctcatcggacggacttgacaagtctagcttaaaggtt
tcctggcaggagaacacaaaaacaatactggttcaaggaataaaatttattcctggggct
cctggttccaaagaattgtgctttgcttggagagagtttgcagagtatattcgagtcaat
ttgatggcaggacccccagcacagatcagtcttgttgactggccagaagatgagcttgta
gtggtagttaatggaaaagaactggataagccattcattgtccagctgtgtgatcaatgg
ggcaatccatcacctgaaccacttgtcaaagtctcattggtgaagggtaacaacatgaag
attatgccattaccaccagtacttaaaacagatccaaatgggagagcagactttggggtg
tttacaatcgttgcacctaggggagaaaaccaatttcaaattagagccacttacaacaaa
gttgtgttggagggacctgtcgtaaaactgaatgtcattccagatcaaaacaaacctgtt
ggtctttctgttgattatgacaaaaaggcatcatttcctgcagggggatttttaacagtg
tttatggtaagcgttctttcagaagatggcaagccaatgagacatgtgaacccggctgct
ataacaatgcggatgtggaagggacaggggcatggatctcgactgccagctagtgctaca
gtgttcaactgtaacaaaccaaaggagaatgaaaaagaggactgtttttacttcagggac
aaagtaattcctgatcgagttggggtctacaccattcagtttgtgtatatggtagacaaa
attaatatgctgtgcagtgaccagatttcgctaaatgtggtacctaatgagcctgtgaaa
ttaataccagatgaacagccgccaactccagttgtttcaaatatccgttccattgccagt
cggactttggttcaaaacttgactcttaaaatcatggatgaatataacaaccccacctgt
acagacctggatgggaaagtggtagttaccattaaaagcccaaatcggaatgtcaaggag
attccccagtttcaggggaaagttaaatctgtggaatttaaactcttgaaaggttgcgct
gagatttcgaaccttattcttgcagaaaatagccttggtgttgatggcactgaatatatc
cttcattttgacccagttattccagacctgaaagaagccacattggcagcatttcagctg
tgtttcatgttttcaaatgatttcaaaaagcaacagcaaatgacagccctaacaagggaa
aaagaccagatatcccaatcaattgttgcttacaagagtttatttgacaccaccaatcaa
cttgtcagtgagatgaaatgtcaggctcaggatgcctcagtcaaggaactccaactgaaa
actgagctgaacaaacttaaagtagaaataccacaagtgaatgttgtccaacacattgaa
gaaatgataaaacaaaagagtgcagaaagagaacagatattgaaggaacctagaagaaca
tgcaccatccccatggctcctaaaggaaaccctgatgtacttggaaagattgcacacttg
gcacaaattgaaaacaatgaggcagcaaaggtcatctcctggcacttagcaagtgatatg
gactgtgtggttactttgaccacagattcagcacgtcaaatctttaaggacacacaggga
cggcagcaagtgctcccacttgactcaatctacatgaagaacctcccactgtggaacaga
ccgttaccacatctaaggaatgggaaatgtcactttgaacccatggggaaccctgtgttt
gctcgagatctccttatttttccagaaaatgtgaaacactgtcagacagtctttggaatg
ctccttggagacaccattattcttgatgacttggatgcttcaaacagttataggaaagag
gttgttaaaataacgcattgtcctaccttactgacaaggcaaggggaccgtattcgcagc
aatggaaagtttggaggtcttcagaacaaagcgccttcaatggacaagcttaggggaatg
gtttttggatcgccactgccacccatatactatactttggggaaacaaattgatctgctt
cagcagtaccgcagtgcagtaattaaacttggtaatgtgaaagaagaactagatctgcag
ctgaactacctccgttcaccagaaatgcttcagaaacgagatgaacttaactcgcaagag
aaacaactcaaagatattgaaaaaaaattaggtatgacaccagcaaggggaaccaatggc
tctggattcaaaccaacagtattggacatggctgatggttctccagtctgtacaaaaaga
acaagacgagacaattcacgaaaaacatttagctcagatgagtggatttcccctccggtg
aaaaaactgcatttgacttctgaatcagaaaccagtgacagtgtggtgaaaaggaagaga
aagtcttaa
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