Polyodon spathula (Mississippi paddlefish): 121316216
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Entry
121316216 CDS
T07273
Symbol
babam2
Name
(RefSeq) BRISC and BRCA1-A complex member 2 isoform X1
KO
K12173
BRCA1-A complex subunit BRE
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121316216 (babam2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121316216 (babam2)
03036 Chromosome and associated proteins [BR:
pspa03036
]
121316216 (babam2)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121316216 (babam2)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
121316216 (babam2)
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
BRISC complex
121316216 (babam2)
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
121316216 (babam2)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121316216 (babam2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE
UL17
Motif
Other DBs
NCBI-GeneID:
121316216
NCBI-ProteinID:
XP_041107056
LinkDB
All DBs
Position
5:68386816..68471967
Genome browser
AA seq
386 aa
AA seq
DB search
MNSMSPEVTLNRISPELRPLLSTMVRNGKVGLDSTSCLRITDLKSGCTSLTVGPCCDRFK
LHIPYAGETLKWDIIFNGCTPDLPPDFIFGEDAEFLPEPSELHHLVEWDPGMAECLLQVV
KELIQQYHQYQCKRLQESSRLLFEYHSLLEDPQYGHSMEIYAGRKNSWAGEFSARFLLKL
PVDFSNIPTYLLKDTALDPGEDVALLSVSFEDAEATQVFPKLYLSPRIEHALGGPSALLI
PAFPSGGCLIDYVPQVCQLLTNKVQYVIQGYHKRREYIAAFLSHFGMGVVEYDAEGFTKL
TLLLMWKDFCFLVHVDLPLYFPRDQPTITFQSVYHFTSSGQLYSQVQKSYPYSPRWDGNE
MAKRAKAYFKSFVPQFQEGAFANGKL
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcatgtcccctgaagtgactcttaacaggatctccccagagctcaggcccctc
ctctcaaccatggtcaggaacggcaaggtgggactggactccaccagctgcctccggatc
actgatctcaagtcggggtgcacttccctgacagtgggcccctgctgtgaccgattcaaa
ctacacatcccatacgctggggagacgcttaaatgggacatcatattcaatggctgcact
ccagacctgcccccggacttcatttttggcgaggacgcggagtttcttcccgagccctct
gagctgcatcatctggtggagtgggacccaggcatggcagagtgtctgctgcaggtggtg
aaggaactgattcagcagtaccaccagtaccagtgcaagagactgcaggaaagctcccgt
ctgctgtttgagtaccacagcctactggaggatccgcagtacgggcacagcatggagatc
tacgcaggcaggaagaacagctgggctggagagttctctgcgcgcttcctgttgaagttg
ccagtggattttagcaacatccccacttaccttctgaaggacacggctctggaccctgga
gaggatgtggctcttctttcggtcagctttgaagatgcagaggccactcaggtcttcccc
aagctctacctatcccctcgcatcgagcatgcgcttggaggaccttcagccctgcttatc
ccagcgttccccagtggtgggtgtctgattgactacgtgcctcaggtgtgtcagctcctc
acaaacaaggtgcaatatgtcattcagggctatcacaaaagacgggagtacattgcagct
tttctcagccactttgggatgggagtggtggagtatgatgcagagggtttcaccaagctc
accctgctgctgatgtggaaagacttctgtttcctcgttcatgttgacctgcccctgtac
ttccctcgagatcagcccacaatcaccttccagtccgtgtaccacttcaccagcagcggg
cagctctactcccaggtgcagaagtcctacccatacagcccgcgctgggatggcaacgag
atggccaagagagccaaggcctatttcaagagctttgttcctcagttccaagagggagcg
ttcgccaacggaaagctctag
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