Polyodon spathula (Mississippi paddlefish): 121318439
Help
Entry
121318439 CDS
T07273
Name
(RefSeq) apoptotic protease-activating factor 1-like isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04115
p53 signaling pathway
pspa04210
Apoptosis
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
121318439
04115 p53 signaling pathway
121318439
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121318439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
APAF1_C
WDR55
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
WD40_Gbeta
WHD_APAF1
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
NB-ARC
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
CARD
WDR90_beta-prop_4th
Beta-prop_WDR41
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
RMC1_N
Beta-prop_IFT140_1st
Beta-prop_SCAP
Beta-prop_VPS8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
Ge1_WD40
WD40_like
CARD_2
eIF2A
Beta-prop_Nup120_160
WDR54
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_RSE1_2nd
Beta-prop_WDR75_2nd
AAA_16
Beta-prop_IP5PC_F
Beta-prop_WDR11_2nd
PROPPIN
Beta-prop_ACSF4
Utp8_b_propeller
Motif
Other DBs
NCBI-GeneID:
121318439
NCBI-ProteinID:
XP_041111047
LinkDB
All DBs
Position
7:26161873..26232422
Genome browser
AA seq
1291 aa
AA seq
DB search
MDERARSCLLSSRSKLEQDIKASYIMDHMVSDGVLNADEEEKVKACTTRKEKAVALLNLI
LKKDNYAYISFYNALLHEGYGDLASMLQQDLPLISPAAEKSFLDGGTPFVQTILCEGGVP
QRPVVFVCRPELINRIREELYKLENGFGWVVVFGMAGFGKSVLTAEAVRDEQLIKTCFPG
GVHWLSVGQLDKAGLLVKMQSLCYRLDQDSQSSQRPPVTIEEARDRLRFLMVRKYPRSLL
ILDDIWDGGVLKAFDIQCRVLFSTRDRSVSDSVSGKKYEVSVADGLEDDKALEVLALFVN
KKVSALPVQARSIVHECKGSPLVVSLIGALLREFPDRWQYYLRQLQNKQFKRIRKSSSYD
YDALDQAMSVSIDVLREDRKEYYKDLSVLEKDVKVPAKVLSVLWDLEPEEAEDILQEFVN
KSLLFRDCNKRPYQYYLHDLQLDFLTEQNRYRLKDLHSKMVRLYQNHHKKGHSTVADEEC
MYWFRYLAYHMAHGNLHEELYSLMFSLDWVKAKAQMMGPASLINDYVEYKDILDEENSTV
RDNFQEFLSLNGHYLEQKPFPDVVQMGLCQPDSSEVYRQARLKAEQETKKGAFYLEWINK
SSLESLSRLIVQPHKGAVYYACFSHNWQQIASCGSDKTLQVFKSQTGEKLLEVQAHDDDV
LCCAFSPDDKLIATCSADKKIKVWNSQNGNLLRTYNEHSEQVNHCQFTNTSRKILLATCS
NDNFIKLWNTNRPGSQNTMFGHGGPVNHCCFSPDDQYLASCSSDGTLKLWEVHTANEWKS
IDILDFFPSLTDEPKESEVVVRCSAWSSDGTRIIAAAKNMVFVFDIESATLLSEIKTGRH
STIQSCDFCSSIQLVAIALSHYTVELWDLESNKKVADCSGHLSWVHCVRFSPDGSILLSS
SDDQTVRLWETKKVHPSSAVSLKRDSDVLFHHNEIHVIAPDNRKRLQLINGKTGEVIYQS
EEQESRIRCCCLSKDPQAAALAREDGTVKAGVMSPKQVLRNIGWWTLQLLTLQQSLITAL
GLENGTVKVLEVPSGNTLCTLTGHTKTVLHCQFTADGQTLITCSEDTTVRVWDWKSLECK
VLKGHSERVKRFRLLDSSRLLSWSFDGTVKFWDIVTGEMIQDFSCHQGAVLSCDVSPNGS
TFSSVSADKSAKIWSFDSTSALHILNGHKDCVRSCRFSWDNQCLATGDDNGEIRIWRVFD
GSLLHICARENKDSMESLHGGWVTDLHFSPDSKMLVSTGGYIKWWDVEKGESLRTFYTTG
TNLKGIHVSPDFRTFVTIDNIGVLYILHKVG
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggacgagagggcccgcagctgtttgttgagttcaaggtccaaactggagcaagatata
aaggcttcttatatcatggatcacatggttagcgatggagtgctaaacgcagatgaggaa
gagaaggttaaagcctgtacaacacgaaaagaaaaagcagttgcattacttaatttaatc
ttgaaaaaagataactatgcctacatatctttctataatgccttactacatgaaggatat
ggagacctggcgtccatgttgcaacaggaccttccactcatctcaccagctgcagagaaa
agttttttagatggaggaactccatttgttcagacaatcctgtgcgaaggtggtgttcca
caaagacccgttgtgtttgtttgccgtccagagctgataaaccgtattcgagaggaattg
tataaactggaaaatggctttggctgggtggttgtctttggaatggcaggctttgggaag
tctgtgttgacagctgaggcagtgcgggatgaacaacttataaaaacttgctttcctggg
ggagttcattggctatccgttgggcagctggataaggcaggtctattggttaaaatgcag
tctttgtgctaccgtttggatcaggactcccagtccagtcagagaccaccagtcactatt
gaagaagcccgggaccgcctgcggttcctcatggttcgcaaataccccaggtcccttttg
attctggatgatatctgggacggtggggtactaaaggcttttgatattcaatgtagagtt
ctctttagcacccgagacaggagtgtctctgattcagtttcaggtaaaaagtatgaggtt
tctgtggccgatggacttgaggacgacaaagcattggaagtcttagccctttttgtaaac
aagaaagtatccgcattgccagtacaggcacgtagtattgtacatgaatgcaaaggttca
cctcttgtggtctctctaattggagctctgttacgagagtttccagaccgctggcagtac
tatctgaggcaactgcagaacaagcagtttaaaagaatccgcaagtcttcatcgtatgat
tatgatgctttagatcaagccatgtcagtcagcatagacgtgctacgtgaggatcgcaag
gagtactacaaggatctctctgtccttgagaaggatgtgaaagtgccagctaaggtgctg
tctgttctctgggatctggagcctgaggaagctgaagacatactgcaggaatttgttaat
aaatcacttcttttccgcgattgcaataagaggccctatcagtattatctgcacgacctg
caactcgactttctcacagagcagaaccgctacaggcttaaggacctgcattccaagatg
gttcgtctgtaccagaatcatcataaaaagggccattccactgtagctgatgaggagtgc
atgtactggttcaggtacctggcatatcacatggcccatggcaatcttcatgaggagctc
tactctctaatgttttcactggactgggtaaaagccaaggcacagatgatgggacctgcc
agtctcatcaatgactatgtggagtataaagacattttagatgaagagaacagcacagtg
cgtgataattttcaggagtttttatccctgaatggtcactacttggaacaaaagcctttc
cctgatgttgttcagatgggcctttgccagccagactcctcagaggtgtatcgtcaagca
agactgaaggcagagcaggagacgaaaaaaggagctttttacctggagtggataaacaaa
agcagtttagagagtttgtcccgactgattgtccaacctcataagggagcagtttactat
gcctgcttttctcacaactggcaacaaatagcttcctgtggatcagataaaactttgcag
gttttcaaaagccagactggagagaaacttcttgaagttcaagctcatgatgatgacgtg
ctatgctgcgcattctctccagatgacaagttaatagccacgtgttcagctgacaagaaa
ataaaggtctggaattcacaaaatggaaatttgctcagaacatacaatgaacattctgaa
caggtgaatcactgccagtttaccaatacaagtcgcaaaatcttgctggcaacgtgctca
aatgacaactttatcaaactatggaacaccaatagaccaggatctcaaaacacaatgttt
gggcatgggggtcctgttaaccattgctgtttttcacctgatgaccaatacctggccagc
tgttcaagcgatggaactctaaagctttgggaagtacatacagctaatgaatggaagtca
atcgatatactggatttcttcccaagcctcacagatgagcctaaagaatcggaggtggta
gttaggtgcagtgcttggtcatcagatggtacccgaattatagctgctgcaaaaaacatg
gtgtttgtgtttgacatagagagcgctaccttgctgtcagaaattaaaactggtcgacat
agcaccattcagtcctgtgacttctgttccagcattcagctggtagccatagctctgtcc
cattatactgtagagttatgggaccttgagtccaataagaaagtggctgattgtagtgga
cacctgagctgggttcactgtgtgaggttctcacctgatgggtcaatactgctctcatcc
tccgatgaccaaactgtcaggctttgggagaccaagaaagtgcatccatcatctgctgtg
tccttgaagcgtgactcagatgtactcttccaccacaatgaaattcatgtgatagcgcct
gacaacaggaaacgtttgcagctgataaatggaaagacaggggaagtgatctatcagtct
gaggaacaggagtcccgcattcgctgctgctgtctcagtaaagaccctcaggctgccgcc
ttggcacgagaggatggaactgtaaaggcaggtgtgatgtccccaaagcaggtactaagg
aacattggctggtggacactgcagcttctgacactccagcagagcctcataacagcacta
ggactagagaatggcacagtaaaggttttggaagtgcccagtggtaataccctatgcact
ttaacaggacacacaaaaactgtcttgcattgccagtttacagctgatggacagacactt
ataacctgctctgaagatacaactgttagggtatgggactggaagtctttggaatgcaag
gtgctgaaaggacacagtgagcgggtaaagagattcagactgttggatagttcaaggctc
ttgtcctggtcctttgatggaactgttaagttctgggacatcgtcactggtgagatgatc
caggacttctcctgccatcaaggggcggttctgtcttgtgatgtgtcacctaatggaagt
acattttcatctgtctctgcagacaaaagtgccaagatctggagttttgactccactagt
gcccttcacattctgaacggccataaagactgtgttcggagctgccgcttctcctgggat
aaccagtgcttggctactggagatgacaatggagaaataaggatctggcgtgtgtttgat
ggttctctgcttcatatttgtgcaagagaaaataaggactctatggagtccctacatggt
ggctgggtaacagatctacatttctcccctgacagcaagatgctcgtttctactggaggt
tatattaagtggtgggacgtagagaagggggaatctctgcgaacgttttataccactgga
acgaatctaaagggaatccatgtatcccctgacttcagaacttttgtaaccattgacaac
attggggttctgtacatcttacataaggtggggtga
DBGET
integrated database retrieval system
