Polyodon spathula (Mississippi paddlefish): 121318478
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Entry
121318478 CDS
T07273
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like isoform X1
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121318478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121318478
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
121318478
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
121318478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DDE_5
Motif
Other DBs
NCBI-GeneID:
121318478
NCBI-ProteinID:
XP_041111127
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All DBs
Position
7:complement(27653076..27665784)
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AA seq
420 aa
AA seq
DB search
MEEKQYTSLTVPTDYLQHWFQSTQQFQALQATQYHQMSTVSPYMDRSGEGTEMTELSVHQ
EPAPVAEPAPTKGKRGRPPAKEPKKPGPKKAKAADGAAGGKQEKISDAFKKVKRKMNRFN
GVSEAELMMKTLPDILTFNLDIVIVGINPGLMAAHKGHHYPGPGNHFWKCLFLSGLSDTQ
LNHVDDQLLPEKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVEKLKKYKPVVAAFNGK
CIYEIFSKEIFGVKIKKFEFGVQPHRIPETETACYVMPSSSARCAQFPRAQDKVHYYIKL
KELRDQLKGKPSVTSDVQELEYSFDLKLAKEDAKRMAIKEEKYDPGYEAAFGGAYSESGP
EGNGPCNFSATEPEAGSKEVGTPPAFGQVPEGQWMMQSFADQIPHIGSCSTQPREATGAE
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcagtacacttctttgacggttcccacggattaccttcagcattggttt
cagtcaactcagcagttccaagcccttcaagctacgcaataccaccagatgtcaactgtt
tctccatacatggacaggtcaggagaaggcacagagatgacggagctttctgtccatcag
gagcctgcacctgttgcagaaccagctcctacaaagggaaagcgaggcagacctcctgca
aaagagccaaagaaacctggtcccaaaaaagcaaaggcagctgatggagctgccggaggg
aagcaggagaagatttcggatgccttcaagaaagtaaagaggaaaatgaatcgcttcaac
ggtgtgtctgaggctgaactcatgatgaaaactctgcctgatattcttacgttcaatctg
gacattgtgattgttggtattaatccaggactgatggcagctcacaaaggacatcattat
cctgggccagggaaccacttctggaagtgcctctttttgtctggcctcagcgatactcag
ttaaatcatgtggatgaccagctattgccagaaaagtatggtattgggtttacaaacatg
gtggagaggacaactccaggaagcaaagacctttccagcaaagagtttcgagaaggaggc
agaattctagtagagaagctaaagaagtataaaccagttgtagcagcttttaatggaaaa
tgcatttacgaaatttttagcaaagaaatctttggcgtcaagattaagaaatttgaattt
ggtgtgcagcctcacaggattccagaaaccgaaacggcatgctatgtgatgccctcatca
agtgcacgctgtgcccagtttccccgagcccaagataaagtccactactacatcaagctg
aaagagctgcgtgaccagctgaagggtaaaccatcagtcaccagtgatgtgcaagagctg
gaatacagtttcgatctgaagttggcaaaggaggatgcaaagaggatggctattaaggag
gagaagtatgatccaggttacgaagctgctttcggtggtgcttacagcgagtctggacca
gagggcaatggcccctgtaatttctctgccactgagccagaagctggcagtaaggaggtg
ggtacaccacctgcttttggacaggttccagaaggacaatggatgatgcaatcgtttgca
gatcagattccacacattggcagctgtagcacgcaacctcgagaggcaacaggagctgag
taa
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