Polyodon spathula (Mississippi paddlefish): 121318656
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Entry
121318656 CDS
T07273
Name
(RefSeq) short transient receptor potential channel 5-like
KO
K04968
transient receptor potential cation channel subfamily C member 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pspa01009
]
121318656
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121318656
Protein phosphatases and associated proteins [BR:
pspa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121318656
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121318656
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_3
Ank_4
PKD_channel
YVC1_C
LHD_TRPY1
Motif
Other DBs
NCBI-GeneID:
121318656
NCBI-ProteinID:
XP_041111496
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All DBs
Position
7:complement(45219820..45337261)
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AA seq
977 aa
AA seq
DB search
MAQLYYKKVNYSPYRDRIPLQIVRAEAELSPQEKAYLIAVEKGDYASVKQALEEAEIYYN
ININCMDPLGRSALLIAIENENLEIMELQLSHNIYVGDALLYAIRKEVVGAVELLLSHRK
PSGEKQVSSLMMDNQFSEFTPDITPIMLAAHTNNYEIIKLLVQRKVTIPRPHQIRCNCVE
CVSSSEVDSLRHSRSRLNIYKALASPSLIALSSEDPILTCFRLGWELKELSKVENEFKAE
YEELSQQCKRFAKDLLDQARSSRELEIILNHRDDQSEELDPSECHDLAKLKLAIKYHQKE
FVAQPNCQQLLATLWYDGFPGWRRRHWAVKLLTCFTIGLLFPVFSVVYLLAPKSSLGLFI
KKPFIKFICHTASYLTFLFLLLLASQHIVRTDLHMQGPPPTIVEWMILPWVLGFIWAEIK
EMWDGGFTEYVHDWWNLMDFAMNSLYLATISLKIVAYVKYNGSRPREEWEMWHPTLIAEA
LFAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYF
YYETSAAEEPHNCKGIRCEKQNNAFSTLFETLQSLFWSVFGLLNLYVTNVKARHEFTEFV
GATMFGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFDEGGTLPPP
FNIIVSPKSIWYLCVWLHRKLCPGKSRDEEHKKHENFKTFTEHHADILIQNQHYQEVIRN
LVKRYVASMIRSAKTDEGLTEENFKELKQDISSFRYEVLDLLGNRKPPRRTYSSSSDATL
KDEMNDDDGGKCKSKNVSFNQADKKKDTFSVSALFRSMSGIDIAEEKPKSNGFKKSFVKN
GNRLQRISTSKKDSFKRLGLLFSKMNGHVSEPSSSEPMYTISDGLIQPKHMWQDFKYSQS
EVHLNEVGMDESAKVNGTDLLLPPVCSNSLHCASSITASSSKLINSTEDVFDGWEGGCSV
LINNWNAGQEDNVTTQL
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagctctactacaagaaggtgaactactctccttaccgggaccgcatccccctg
cagatcgtccgcgcagaggccgagctctctccccaggagaaagcctacctgatcgcggtg
gagaagggggattacgccagcgtgaagcaggccctggaggaggcagagatctactacaac
atcaacatcaactgcatggaccccctggggcgcagcgccctgctcatcgccattgagaac
gagaacctggagatcatggagctgcagctgagccacaacatctacgtgggggacgcgctg
ctctacgccatccgcaaagaggtggtgggggctgtggaactgctgctgagccaccgcaaa
cccagcggggagaagcaggtctcttccttaatgatggataaccagttttcagagttcacg
cctgacatcacccctatcatgctggcagcccacaccaacaactatgagatcatcaagctc
ctggtccaacgcaaggtcaccatcccgcgtccgcaccagatccgctgcaactgcgtggag
tgcgtgtcgagctcggaggtggacagcctacgtcactcccgctcccgcctcaacatctac
aaggctctggccagcccctccctcatcgccctgtccagcgaggaccccatcctcacctgc
ttccggctgggctgggagctcaaggagctgagcaaggtggagaacgagttcaaggcggag
tacgaggagctttcccagcagtgcaagcgctttgccaaggatctcctggaccaggcccgc
agctcccgggagctggagatcatcctgaaccatcgggatgaccagagcgaggagctagac
ccgagcgagtgccacgacctggccaagctcaagctggccatcaaataccaccagaaagag
tttgtggctcagccgaactgccagcagctcctggcgactctgtggtacgatgggttccct
ggctggcgccggcggcactgggctgtcaagctgctgacctgcttcaccatcgggctgctc
ttcccggtcttctcggtggtttacctgctagctcccaagagcagcctgggcctgttcatc
aagaagccattcatcaagttcatctgccacaccgcctcctacctgacattcctgttcctg
ctgctcctcgcctcccagcacatcgtccgcacagacctgcacatgcagggccctccaccc
accatcgttgaatggatgatactgccctgggtgctgggattcatctgggctgaaattaaa
gaaatgtgggacggggggttcaccgagtatgtccatgactggtggaacctgatggatttc
gcaatgaactccctgtatctcgccaccatctcattaaagattgttgcatatgtcaagtac
aacggctctcgtccacgggaggagtgggagatgtggcaccccaccctgatcgcagaggcc
ctgtttgccattgccaatatcttcagttccctgcggctcatctccctgttcactgccaac
tcccacctggggcctctacagatctcgctgggccgcatgctgctggacatcctcaagttc
ctcttcatctactgcctggtgctgctcgcattcgccaatggcctcaaccagctgtacttc
tactatgagaccagcgctgcagaggagccccataactgcaagggcatccgctgtgagaaa
cagaacaacgccttctcaacgctatttgagaccctgcagtccctgttctggtctgtgttt
ggtttgctgaatctctacgtcaccaatgtgaaagcccgacacgagtttacggaatttgtt
ggcgccaccatgtttggcacgtacaacgtgatctctcttgtggtgctgctcaacatgctg
atagccatgatgaacaactcctaccagcttattgcagaccacgcagatattgagtggaag
tttgcccggacgaagctgtggatgagctattttgatgaggggggcaccctgccgcccccc
ttcaacatcattgtgagccccaagtccatctggtacctgtgcgtgtggctccaccggaag
ctctgccctgggaagagtcgtgatgaggagcacaagaagcatgagaacttcaagacattc
acggaacaccatgctgacatcctcatccagaaccaacattaccaggaagtcatacgaaat
ttggtgaaaagatacgtagcctccatgataaggagtgccaagacagacgagggtctaaca
gaggagaatttcaaggagctgaagcaggacatttccagcttccgctatgaagttctcgac
ctgctgggcaacagaaagcccccacggcggacctactcctccagcagcgatgccaccctg
aaggatgagatgaatgacgatgatgggggcaagtgcaaatccaagaacgtctccttcaac
caggccgacaaaaagaaagacaccttcagcgtgtcggctctgttccgctccatgtcggga
atcgacattgctgaggagaaaccaaagagcaacggcttcaagaagtcctttgttaagaac
ggcaaccggctgcagagaatctccacctccaaaaaggactctttcaagagactgggcctg
ctgttctccaagatgaacgggcatgtttcggagcccagctcctcagaacccatgtacacc
atctcggacgggcttattcagcccaagcacatgtggcaggacttcaagtactctcagagc
gaggttcacctcaatgaagttggcatggatgagtcggccaaggtcaacggcacagacctt
ctcctgcctcccgtctgcagcaactcccttcactgtgcttccagcatcaccgcttccagc
tcaaagctcatcaactccacggaggatgtgtttgatggctgggaggggggttgcagtgtg
ctcattaacaattggaatgcagggcaagaggacaacgttaccacccagttatga
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