Polyodon spathula (Mississippi paddlefish): 121319896
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Entry
121319896 CDS
T07273
Name
(RefSeq) interferon regulatory factor 5-like
KO
K09446
interferon regulatory factor 5
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121319896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121319896
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
121319896
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
121319896
NCBI-ProteinID:
XP_041113771
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All DBs
Position
8:37140356..37152062
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AA seq
497 aa
AA seq
DB search
MNLQPRRIRLKPWLISQVNSGKYPGLQWLDHEQTHFQIPWRHATRYAPMQEDENTVFRAW
ALETGKYQEGVDEPDPAKWKANLRCALNKSREFKLKYDGTKETPVKPFKIYEVCDQQCNG
DAAEDEEEELPNLGGLSIAPTSFPSYPPFKQELQFNPCMNGTFIPRSLPAMEPMPCNITT
NPNGNLGIRDGSYQNVTVTANNIPLPEHTVGNLGHGGFAHANTPAGHVDMAHGTIPVETL
PQVEVPPQLCINDLLISPHMLPLTDLELKFQYRGKQAGTLTVSNPQGCRLYYGNLEPMPD
QVELFGPVTLQQVLFPNTMEIPNEKQRYYTNQLLDVMDRGLILEIRGQDIYAIRLCQCKV
YWSGPAVLEEAGPNPIEREKKIKIFSLNDFLHGLILYQKGETNAPPPFEIYFCFGEDWPD
RKPKEKKLIIVQVVPVVARILTEMFSGELSWSTDSIRLQISNPDLKDQTVEQFKELHRIW
QNQQTQGQWGVQQPDLH
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccagccacggcggatccgtctgaaaccctggctgatttcccaggtgaacagc
gggaagtaccctgggctgcaatggttagaccatgagcaaacacacttccagataccctgg
cgacatgctacccgctacgcccccatgcaagaggatgagaacaccgtcttcagggcctgg
gctttggagactgggaaataccaggaaggagtggatgagcccgatccagccaagtggaaa
gcgaatctgcgctgtgccctcaacaagagtcgcgagtttaaactgaagtacgacgggaca
aaggaaacccctgttaagccatttaaaatatacgaggtgtgcgaccagcaatgcaatgga
gatgcagctgaagatgaggaagaggagctcccaaacctaggtggcctctctattgccccc
accagtttcccatcttatccaccattcaagcaagaactgcagttcaacccctgtatgaat
ggaacctttattcctcgcagtcttcccgcaatggagccaatgccttgcaacatcaccacc
aaccccaatggcaatcttggtataagagatggttcttaccaaaatgtgactgtgactgct
aataacatccctttgccagaacatacagtgggaaaccttggacatggaggctttgcacat
gccaataccccggcaggtcatgttgatatggcacatggaaccattcctgtagaaacactt
cctcaagtagaagtacctccacagctgtgtattaacgatctgctcatcagtccacatatg
ctaccattgacagatttagaactaaaattccagtatcgtgggaagcaagctgggaccttg
actgtcagtaacccccagggctgtcgtctgtactatggtaacttggagcccatgccagac
caggtggaattgtttgggcctgtgacgttgcagcaggtgctgttccctaacacaatggag
attcccaacgagaagcaacgttactacaccaaccagctactggacgtcatggacagaggt
ctcattctggagatccgcggacaggatatctatgccatacgcctttgccagtgtaaggta
tactggtctggaccagcagtcctggaggaagctgggcccaatcctatcgagagggaaaag
aagatcaaaatattcagcttgaacgacttccttcatggactgatcctctatcagaaagga
gaaactaacgccccacctccctttgaaatatacttttgttttggggaggattggccagac
aggaaaccaaaagagaaaaagcttattatcgtccaggttgtccctgtggttgcccgaatt
ctgaccgagatgttttcaggtgaactgtcctggtcaacagacagcatccgcctgcagatc
tccaatccagacctgaaagaccagacggtggagcagttcaaagagcttcaccggatctgg
cagaaccaacaaacacaagggcagtggggcgtgcagcaacctgacctccactaa
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