Polyodon spathula (Mississippi paddlefish): 121320410
Help
Entry
121320410 CDS
T07273
Name
(RefSeq) T-lymphoma invasion and metastasis-inducing protein 1-like isoform X1
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04530
Tight junction
pspa04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
121320410
09142 Cell motility
04810 Regulation of actin cytoskeleton
121320410
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
121320410
Domain-containing proteins not elsewhere classified [BR:
pspa04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
121320410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
Tiam_CC_Ex
PH
PDZ
PH_9
RBD
PDZ_2
InhA-like_MAM
PDZ_6
DUF5534
Motif
Other DBs
NCBI-GeneID:
121320410
NCBI-ProteinID:
XP_041114645
LinkDB
All DBs
Position
9:complement(13359048..13463325)
Genome browser
AA seq
1591 aa
AA seq
DB search
MGNVESQNGDHAFYGENQGQLSRKHMSRSLRISNKQSRRSRHASSGKVEHRNSETSTRSS
STPSIPQSLAENGLELFNETNVLEDFGRPIWVDRVAMNLRPVSFHTESLVDSSMDNNTVQ
TAASVPSMQETKDSRLFQGEVIYLQRTRNGSCGNESVNFKKKRSKSADMWREDSLEFSLS
DLSQEHLTSTEEIIDTTEKDYHKCERLKANSSPKGMETLDSSHRANSLDELYGQSSPSVI
NGAPRNRSVKYCRNLVSHSQEVETSEETSDDKVLSPSEDDAASYGAYTLPCRRSHCLSEG
APSQQVTHSNSMQGRRAKTTQDVTTWEGSEYADSGIDGTTTDSDLKTRRSKAMSATYSPS
TCTGSSVFIGSDSGSNVGDALFQGVYENFRRELEMSSTNTGSLEEASAVSDEQSSGTMSS
PGKSDILLTAAQGTVRKAGALAVKNFLVHKKNKKVELATRRKWKRYWVSLKGCTLFFYEA
DGQLGIDHNSIPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTCSQTELENWI
TAIHSACATAVARQHHKDDTVKLLKTEIKKLEQKIDMDEKMKKMGEMQLSSVKDTKKRKT
ILEQIFLWEQNLEQFQMDLFRFRCYLSSLQGGELPNPKRLLAFASRPTKHAMGRLRIFSV
SSFHALVAARTESGVRRRTQVMSRSASKRKSRFSSLWGLDTTSKKKTKGRPSISQVFADG
EDTVKKSLDGMFDDPVGVSTKETEAALNTVEQHNQDSDIWVPEHLTPSWVCLPNDQPVLA
IIQPEDLPMDILQMICKIHQLDPAKYYVCLKFLVENQVQFYIPKPEEHLHDMFYKEIEIC
PKVTSLIQFDKNDSSATGYGFSVSVLEEDRVQRIYITDVKEGGLAFAKGLKAGDEILQLN
SKDASHWNVSDMKSAFSQPSLSLVISTVPMDKNKKYCSMPPLRSDGEEQLYSDIFSQSQE
NILDDVGGIGLESTIDEIEMQLETSLETDDSNKSTEQVAAFCRSLHDMNPSELSSQAPDS
SGPQPAILRQLTDADKLRKVICELVETERTYVKDLKCLIDRYLTPLQKETFLTQDELDVL
FGNLAEMLEFQNEFLQTLEDGTRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKIYSA
FCASHTKVPKVFVKAKTDPAFKAFLDAQNPKQQHSSTLESYLIKPIQRVLKYPLLLRELY
SLTDPESEEHYHLDVAMKAMNKVASHINEMQKIHEEYGAVFDQLIAEQIGEKKEVADLSM
GDLLLHTTVVWLNPPSSFGKWKKEPELAAFVFKNAVVFVYKDCSKQKKKMGASHRASVSD
ERDPFRFRHMISTDALQVRALASSDAEGGAVCEVVHVKSESEGRPERTFHLCCSSPESKK
DFLKTIHSVLRDKQRRQLLKTESLPPNQQYVPFGGKRLCALKGARPVMNRAVSAPSRTLG
KRKLVRNRFTIDTDSVFECSPSTETQQQPQAAISADTDRWVEEQFDLDQYEDQEDVKETD
ILSDDDEYCESVKEPTVEYDLPAQVKAVSLTDNTKPEWGNNHKTGDSRAIKMAHLKKQSA
VSGLNCTIENNAEEVIWVRREDFIPVRNSDI
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatgtagaaagtcagaatggggaccatgctttttatggagagaaccagggacag
ttgtcccgcaagcatatgtcccgatcgcttcggatctcaaataaacaatcccggcggtcc
agacatgcttcctcaggaaaagttgaacacagaaactcagaaacgagcactcgatccagc
agcacccccagcatccctcagtccttggcagaaaacggccttgaactctttaatgaaact
aacgtcctagaggactttggcagacccatttgggtagacagggtggctatgaatttaagg
ccagtttcattccatacagagtcattagttgactccagcatggataataacacagtacaa
acagcagcttctgtgccaagcatgcaggaaaccaaagacagtaggttgtttcaaggagag
gttatctacttgcaaagaacacgcaatggatcatgtggaaacgaaagtgtaaacttcaag
aaaaagagatccaaatctgcagatatgtggcgggaagacagcctagagttttccctttct
gatcttagccaagaacacttaacaagcacagaagaaatcattgacacgacagagaaggac
tatcacaagtgtgaaaggttaaaagctaacagcagtccaaaaggtatggagacactggat
tccagccatcgagccaactcacttgatgaactgtatggccaaagcagcccaagtgtaatt
aatggtgctcccaggaacaggtctgtaaaatactgtcggaacctggtgtctcactcacag
gaggttgaaacctctgaagaaaccagtgatgataaggtgctgtctccttcagaagatgat
gctgcctcttacggcgcttacactcttccctgcaggagatctcactgtctttctgaagga
gctcccagccagcaggtgacccattcaaacagcatgcaaggaagaagagctaaaaccaca
caggatgttacaacatgggaaggaagtgaatatgcagatagtgggattgatgggacaaca
actgattcagatctcaaaacaagacgctcaaaagctatgtcagccacatactctccatca
acatgtaccgggagcagtgtttttattggaagtgacagtggcagcaatgtcggagatgcc
ctctttcaaggggtctatgagaactttaggcgcgagttggaaatgagctccactaacaca
gggagcctggaagaagcgtctgcagtgagtgatgagcagagcagtggcactatgagctcg
cctgggaagtctgatatcttacttactgcagcacaggggacggtacgtaaggcaggggcg
cttgctgtgaaaaacttcctcgtgcacaagaagaacaagaaggtggaattggccacacga
cggaagtggaaacgttattgggtctctttaaaaggttgtacattgttcttttatgaggca
gatggtcagttgggaatagaccataacagcatcccaaagcatgcagtttgggtagagaac
agcattgttcaagcagtgcccgagcatccaaagaaagactttgttttctgtctcagtaat
tcacttggggatgctttccttttccagacttgtagtcagactgaactagagaactggata
accgcgattcactctgcctgcgcaactgctgtagcgagacagcatcacaaagatgatacg
gtcaagttactcaagacggagataaaaaagctggaacaaaaaattgacatggatgagaag
atgaagaagatgggggagatgcagctgtcatctgtaaaagacaccaagaaaagaaaaacc
attctagagcagatatttttatgggagcaaaaccttgaacagttccagatggaccttttt
cgctttcgctgttatttatcaagtcttcaaggaggagagttaccaaacccaaaaaggctt
cttgcatttgctagtcgcccgaccaaacatgccatgggacgcctcaggattttttcggtg
tcctcctttcatgctctggtggcagcgcggacagagtctggggtgagacggaggacacag
gtgatgtctcggtcagccagcaaacgcaaaagcaggttctcatctctctgggggctagac
actacctcaaagaaaaagacgaagggaaggcccagcataagccaggtttttgctgatggt
gaagacacagtgaagaaatcattagatggaatgtttgatgaccctgtaggagttagcacc
aaggagactgaagcagcactgaacactgtcgaacagcacaaccaagacagtgatatttgg
gttcctgaacacctcaccccatcctgggtttgtctcccaaatgaccagccagtgctggca
ataattcagcctgaagatttaccaatggacattcttcaaatgatctgcaagattcaccaa
ctagatcctgccaaatactacgtgtgcctaaagtttttagttgaaaaccaagtacaattc
tatatacccaagccagaagaacatcttcatgatatgttctacaaggagattgaaatttgt
ccaaaagttacaagtctcattcagtttgacaagaatgattcatctgctactggttatggt
ttttcagtctcggtgctggaagaggatcgggtgcagcgaatatacatcacagatgtaaag
gaagggggtctagcttttgctaaaggtctaaaagcaggtgatgaaattctgcagcttaat
agcaaagatgctagtcattggaatgtttcagacatgaaatctgccttctctcagccctcg
ctttccttggtcataagcacagtccctatggataagaataagaagtactgctcaatgcca
cctcttcgctcagatggagaggaacaactgtatagtgacatattttctcaaagccaagaa
aatattctagatgacgtgggaggcattggtcttgagagcactatagatgaaatcgaaatg
cagttagaaacttctcttgagacagatgattcaaacaagagtaccgagcaggttgcagct
ttctgtcgtagtcttcatgacatgaatccctccgagctctcttcccaggctccagactcc
tctggacctcaacctgcaatactgcggcagctgaccgatgcagataaactgcgcaaagtc
atctgtgagctggtggaaactgaaagaacctatgttaaagatttaaaatgtcttattgat
aggtatttaacacctttacagaaagaaacctttcttactcaagatgagcttgatgtgctt
tttggaaacctggcagaaatgttggagttccaaaatgaatttcttcaaacacttgaagat
ggaacaaggctggtgcctgacttggaaaaacttgaaaaagttgatcagttcaagaaggtg
ctgttctccctgggtggctcttttctatactacgcagaccgcttcaagatctacagtgcg
ttttgtgccagccatacaaaagttccaaaggtgtttgtaaaagctaaaactgaccctgct
ttcaaggccttccttgatgctcagaatcccaaacagcagcactcctccactctggaatcc
tacctgattaaacctatccagcgggtgcttaagtaccctttgctgctgagggagctatat
tccttaacagaccctgaaagtgaagaacattatcatcttgatgttgcaatgaaagcaatg
aacaaagtagcgagccacattaatgaaatgcaaaaaatccacgaagagtatggtgccgta
tttgaccaactgatagctgaacaaattggagagaaaaaagaggttgcagatctgtcgatg
ggggacttgctgcttcacacaacagttgtttggcttaaccccccttcctcttttggaaaa
tggaaaaaagaaccagagttagcagcgtttgtttttaaaaatgccgttgtatttgtttac
aaagattgctcaaagcagaagaaaaaaatgggggcgtctcatagagcttcagtctcagac
gagagagatccatttcggttccgccacatgatttctactgatgctcttcaagttcgtgca
cttgccagttcagatgcggagggaggtgctgtgtgtgaagttgtgcatgtaaaatctgag
tctgaaggaagaccagaaagaacattccacctgtgttgcagctctccagagagtaagaaa
gactttttaaagacaatccactctgttcttcgggataaacagcggaggcagcttctcaaa
actgaaagtttaccacctaatcagcagtatgtgccttttggagggaagcggctttgtgcc
ctgaagggagcaagacctgtaatgaacagagcagtttctgcgccgtctaggactcttggg
aagagaaagcttgtgaggaacaggtttaccattgatacagacagtgtgtttgagtgtagt
ccttctacagagactcagcagcaaccccaagctgccattagcgctgacactgaccgctgg
gtggaagagcagtttgatctggatcaatacgaggatcaggaggatgtcaaggagactgac
attctgagcgacgatgatgagtactgcgaatcagtcaaggagcctactgtggagtatgac
ctgccagcccaggtaaaagcagtctctctcacggacaacacaaaacctgagtgggggaat
aatcataagactggggattcccgtgcaatcaaaatggcccaccttaagaaacaatctgcc
gtatcaggactcaattgcaccatagaaaacaatgccgaagaggtgatctgggtgagacgg
gaagattttatacctgttcgaaacagtgacatttaa
DBGET
integrated database retrieval system
