KEGG   Polyodon spathula (Mississippi paddlefish): 121320895
Entry
121320895         CDS       T07273                                 
Name
(RefSeq) C->U-editing enzyme APOBEC-1-like
  KO
K18750  C->U-editing enzyme APOBEC3 [EC:3.5.4.-]
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    121320895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pspa03019]
    121320895
Messenger RNA biogenesis [BR:pspa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     121320895
SSDB
Motif
Pfam: APOBEC2 NAD1 SNAD4 APOBEC_N NAD2 APOBEC3 APOBEC4 APOBEC1 APOBEC4_like APOBEC_C dCMP_cyt_deam_1 SNAD3 Inv-AAD
Other DBs
NCBI-GeneID: 121320895
NCBI-ProteinID: XP_041115595
LinkDB
Position
9:complement(41972956..41980894)
AA seq 210 aa
MPLTLKKRLPEYEFYREFNNTTKNSKTLLCFSLNRENKTLWDLWGYTYNDPCQSHAESIM
LKEVARFFKENHPDTVQKYKLTLYMSFSPCYKCCESLANFLKSDERIGLHVRASKLYFPE
NSSNQKGLQQLKHLGVSIKCETNANPGNVSADIAALESSPLHTDPIEDNLTPDNNNRDRL
PENETPHKHSIKDGLVGSHKGVKRKLSFED
NT seq 633 nt   +upstreamnt  +downstreamnt
atgcctttaacattgaagaaaaggttaccagagtatgaattttacagagaatttaataac
actaccaaaaattctaaaacattgctttgtttcagtctgaatcgggaaaacaagacgctt
tgggatctttggggatatacgtacaatgacccatgccaaagccatgcagaaagcatcatg
ttgaaagaagtggcacgtttctttaaagaaaaccatccagacacagttcaaaagtacaaa
ctgacattgtatatgtcattcagcccttgttataagtgctgtgaaagcttggctaacttt
ctgaaatcagacgaaagaattggtctacatgtaagagcctcaaaactatatttccctgag
aactctagcaatcaaaaaggtctgcagcagctcaagcacctaggggtgtctataaagtgc
gagacaaatgccaacccgggaaacgtctctgcagacattgctgcactggagagcagtcca
cttcacacagatcccatagaggacaacctaacccctgacaacaacaacagagacaggcta
cctgagaatgaaactccacacaaacacagcattaaagatggattggttggcagtcataaa
ggagttaaaaggaagctttcttttgaagattaa

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