Polyodon spathula (Mississippi paddlefish): 121323440
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Entry
121323440 CDS
T07273
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange C9orf72 homolog
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121323440 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121323440 (c9orf72)
Membrane trafficking [BR:
pspa04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
121323440 (c9orf72)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
121323440
NCBI-ProteinID:
XP_041120473
LinkDB
All DBs
Position
1:84383296..84398511
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AA seq
461 aa
AA seq
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MSSDCPPQSPAVAKTVVALEGESPLLAATFAYWDNILGPRVRHIWAPKSEQLLLSDGEIT
FLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIVSLIFDGDWKGDKNTCALSIILPQTE
LSFYLPLHRVCVDRLKHIIRKGRIWMHKGHSIVSVLTTEIIPIMDLLSSMKSHSVPEEID
IKDTVLNDDDIGDSCHEDFLHKAISSHLQTCGCSMVVGSNPEKVNKMVRTLCLFLTPTER
KCSRLCRAESSFRYDSGLYVQGLLKDSTGSFVLPFRQVLYSPYPTTHIDVDVNTVKQMAP
CHEHIFNQRRYMGSELTALWKATSDEEMAPDTIIHANETFTPDLNVFQDVMHTDTLVKSF
LDQVFQLKPGLSLRSMFLAQFLLVLHRKALTLIKYIEDETQKGKKPFRSLRNLKGDLDLT
VEGDLSIVMALAEKLKAGLHSFVFGKSFFTSVQERDALMSF
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgactgtcccccacaatccccagcagttgcaaagactgtggttgccttggaa
ggagagtcaccattgttagctgccacctttgcctactgggacaacattcttggtccaaga
gtccgacacatttgggctccaaagtctgagcagctgcttctcagtgatggggaaatcaca
tttttagctaatcacactctgaacggagaaatcctgagaagtgctgagtgtggagccgtt
gacgtaaagttttttgtgctggccgagaaaggtgtcattatagtgtctttaatctttgat
ggggactggaaaggagataaaaacacatgtgcactctccataatcttgccacaaactgag
ctgagcttttacttgcctttgcacagagtctgtgttgaccgtctgaagcatattattaga
aaaggaagaatatggatgcacaagggacacagcattgtatctgtgcttacaactgaaatc
attccaataatggatctgctgtcttccatgaagtcgcacagcgtcccagaggaaatagat
attaaggacacagtgttaaatgatgatgacattggagatagctgccatgaagattttcta
cataaggctattagctcacatttgcaaacgtgtggctgctctatggtggtggggagcaat
ccagagaaagttaacaagatggtcagaactctttgtcttttcttgactcctactgaacgt
aaatgctcacggctttgcagagcagaatcatccttcagatatgattctggcctctatgtg
cagggcttattaaaggattcaactggcagttttgttttgccctttcgccaagtgctatat
tccccttatccaaccacacacattgatgtagacgtcaataccgtaaaacagatggcacct
tgtcatgagcatatttttaaccaacggcgctacatgggatccgagcttacagcactttgg
aaagctacatctgatgaagaaatggctcctgatacaattatacatgcaaatgaaactttc
actccagatttgaatgtgtttcaggatgtaatgcatacagacactctggtgaagtccttc
ttggatcaggtctttcagctgaagcctggattgtccctcagaagcatgttccttgctcag
tttctgcttgtccttcatagaaaagcactaacactgataaagtacatagaggatgaaaca
caaaagggaaagaagcctttccggtccctccgcaacctgaagggagatctggatctgaca
gtggaaggagatctcagtattgtgatggccttggctgaaaagctgaaagctggcctacac
tcatttgtgtttggaaagtcattctttactagcgtgcaggaacgagatgccttaatgagt
ttttaa
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