Polyodon spathula (Mississippi paddlefish): 121323740
Help
Entry
121323740 CDS
T07273
Name
(RefSeq) short transient receptor potential channel 3-like
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121323740
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121323740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
121323740
NCBI-ProteinID:
XP_041120868
LinkDB
All DBs
Position
1:86810588..86836843
Genome browser
AA seq
913 aa
AA seq
DB search
MSAKGRKYQKRVSFSEEDNDQDWKEENGGLDSHHLRSVKTVRDSSGYYHHTMQGGDNNPI
EKRLTMMREKGRRQAIRGPAFMFNNRSTSLTTEEERFLDAAEYGNIPVVRKMLEESRTLN
VNCVDYMGQSSLQLAVGNEHLEVTELLLKIDNLARIGDALMLAISKGYVRIVEAILNHPA
FVTSKRLTLSPCQLQDDDFYSYDEDGTRFSPDITPIILAAHCQKYEVVHMLLMKGARIEK
PHDYFCKCNECMEKQRHDAFSHSRARINAYRGLASPAYLSLSSEDPVFTALELSNELAKL
ANIEKEFKDNKKKETVQLNCFSLNDYRKLSMQCKDFVVGVLDLCRDTEEVEAILNGDVDA
EQVQGQHHRASLSRVKLAIKYEVKKFVAHPNCQQQLLTIWYENISGLREQATAIKCLVVL
VVALGLPFLAVGYWFAPCSRLGKILRSPFMKFVAHAASFIIFLGLLVFNASDRFEGITTL
PNVTVTDYPAQIFRVKTTRFSWTEMLIMVWVLGMMWSECKDLWMEGPREYILQLWNVLDF
GMLSIFIAAFTARFFAFLQATKAQQFVDEHNFSDLSTVTLPPDIAYFTYARDKWLPSDPQ
LISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVLFIMVFLAFMIGM
FILYSYYLGAKVNPAFTTVEESFKTLFWSIFGLSEVSSVVLKYDHKFIENIGYVLYGIYN
VTMVVVLLNMLIAMINSSYQEIEDDADVEWKFARSKLWLSYFDDGKTLPPPYSIVPSPKS
FFYCIMRVVNLFRCRRRRLKKDVELGMDNSKSRLNLFTQSNLKISETHSFNSILNQPTRY
QQIVKRLIKRFVLKAQVDKESDEVNEGELKEIKQDISSLRYELLEDKSQTTEELCVLIQK
LSDKLNVSMTRCE
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaaaaggcaggaagtatcagaagagagtgtctttctctgaggaggacaatgat
caggattggaaagaagagaacgggggtctggattcacatcatttgagatcagtgaaaacc
gttagggattcatctggctactaccatcacacaatgcaagggggtgataataatcccata
gaaaagcgactcacgatgatgagagagaagggaagacgacaagctatccgaggcccggcg
ttcatgtttaacaacagaagcaccagcctgacgacagaagaggagagatttttggatgcc
gcagagtatggaaacattcctgttgtgcgcaagatgcttgaggaatccaggactttaaat
gtcaactgcgtcgactacatgggccaaagcagcctgcagctcgcagttggaaatgaacat
ctggaagtgactgagctgctcctgaaaatcgacaacttggcccgcattggtgatgctctg
atgcttgctatcagcaagggttatgtgcggattgtggaagcgattttgaaccacccggct
tttgttacaagtaaacgcttgactctcagcccctgtcagctgcaggatgatgacttttat
tcctatgatgaagatggcacaaggttctctcctgacatcacccctatcattctagctgcc
cactgccagaagtacgaggtcgtgcacatgctgctcatgaaaggcgctcgcattgagaaa
ccccatgactatttctgcaagtgcaatgaatgcatggaaaagcagaggcatgacgctttc
agtcattcccgtgcaagaataaatgcctacagaggattagcaagtcctgcttatctgtct
ttgtctagtgaagacccagtcttcacagctttagaacttagcaatgagctggccaagctg
gccaacattgaaaaagaatttaaggacaacaaaaaaaaagagacggtgcagctcaattgc
ttctccctgaatgactatcgcaagctatctatgcaatgtaaggactttgtagtgggtgtt
cttgatttgtgccgagatactgaagaagtcgaagccatactgaacggagatgtggatgct
gaacaagtccaagggcaacaccacagggcttcccttagtcgagtcaaacttgccatcaag
tacgaagtcaagaagtttgttgcccatccaaactgtcaacagcagttgctgacaatctgg
tatgaaaacatctcaggactacgggagcaggccaccgccatcaaatgccttgtggtactt
gttgttgccttaggccttccattccttgctgttggatactggtttgctccatgtagcagg
cttgggaaaatcctccgaagtccctttatgaagtttgtggcacatgctgcatccttcatt
atattcctgggattgctggtgtttaatgcctctgacagatttgaaggcataacaacatta
ccaaacgtcacagtcacagattatcctgcacagatattccgagtgaaaaccacaaggttt
agctggacagagatgctcatcatggtctgggttctaggtatgatgtggtcagaatgtaag
gatctgtggatggaaggcccaagagaatacattttgcagttgtggaacgttctggatttt
ggaatgctctctatatttatcgctgcattcacagcaagattctttgccttccttcaggcc
acgaaagctcaacaatttgtagatgaacacaatttcagtgacctatctacagtaacactt
ccaccagatattgcatactttacctatgcaagagacaaatggctcccctcagatccacag
ctcatatctgaaggtctatatgctattgcagtggttctcagtttctccaggattgcttat
attctgcctgcaaatgagagctttggcccactgcagatctcccttggcaggacggtcaag
gacatttttaagtttatggtcttgtttatcatggtattcctggcctttatgattgggatg
tttattctctattcatactaccttggtgctaaagtgaacccagcttttaccacagttgaa
gaaagttttaaaactttgttttggtctatatttggtctgtctgaagtatcttcagtcgtg
ctcaaatatgaccataaattcattgaaaacattggctatgtattatatggaatatacaat
gtgacaatggtggtggtgcttctcaacatgctgattgccatgatcaacagttcataccaa
gaaatagaggatgatgcagacgtggaatggaaatttgctcgttcaaaactctggctgtcg
tactttgatgatggaaaaacattaccccctccatacagtattgtgcccagccccaaatcc
ttcttttactgcatcatgagagtggtgaaccttttcagatgcagaaggagaagacttaag
aaggatgtagaactgggaatggacaactccaagtccaggttgaacctgtttactcagtcg
aacctgaaaatctcagaaacgcacagtttcaactctatactcaaccaaccaacacgctat
cagcaaatagtaaaacgtcttataaaacgctttgtgttaaaagcacaagttgacaaggaa
agtgacgaagtcaatgagggtgaactgaaagaaatcaaacaggacatctccagtctccgc
tatgaacttctggaagacaagtctcaaacgactgaggagctgtgtgttctgatacaaaag
cttagtgataagcttaacgttagcatgacaagatgtgaatga
DBGET
integrated database retrieval system
