Polyodon spathula (Mississippi paddlefish): 121324342
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Entry
121324342 CDS
T07273
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121324342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pspa03041
]
121324342
Spliceosome [BR:
pspa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
121324342
Complex C
U5 SnRNP specific factors
121324342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
121324342
NCBI-ProteinID:
XP_041122011
LinkDB
All DBs
Position
12:complement(38881089..38907721)
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEEDDLDRDARDADEEDEDDEEEPADQDEEHPGMEVVLHED
KKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLRYTDILFTEQERGVGIK
STPVTMVLPDSRDKSYLFNIMDTPGHVNFSDEVTSGIRISDGIVLFIDAAEGVMLNTERL
IKHAVQEHLAVTICINKIDRLMVELKLPPTDAYYKLRHIVDEVNSLLSMYSTDENLIVSP
LLGNVCFSSSQYSICFTLGSFAKIYSDTYGDISYNEFAKRLWGDIYFNPKTRKFTKKAPN
SSSQRSFVEFVLEPLYKILAQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCKK
FFGEFTGFVDMCVQHIPSPQDGARNKIEHSYNGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTIGRLWISVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggatctgtatgacgagtttgggaactacatcgggccggagctggactcggac
gaggaggatgacctggaccgggacgcccgtgacgcagatgaggaggatgaggatgatgag
gaggagccagctgatcaggatgaggagcaccctgggatggaggtggtgctgcacgaggat
aagaagtactaccccactgcggaggaggtgtacgggccagaggtggagaccatagtccag
gaggaggacacccagcctctcacagagcccatcatcaaaccagtcaagacaaagaagttt
acattaatggagcaggagctgcccagcactgtctacgacatggagtttctggctgatctg
atggacagtcctgagctgatcaggaacgtcaccctctgtggacacctgcaccacggcaag
acgtgctttgtggattgcctgatcgagcagacccaccctgagatcaggaaaagggacgac
caggatctccgctacactgacattctcttcacagagcaggagaggggggttgggatcaag
agcaccccagtgaccatggtgctgccggactccagagacaagtcctacctgttcaacatc
atggacacgccaggtcatgttaacttctctgatgaggtgacctctggcatcaggatctcc
gatggcatcgtgctctttattgatgcggctgagggggtgatgctgaacacggagcggctg
attaagcacgctgtgcaggagcatctggccgtcaccatctgcatcaacaagatcgaccgg
ctcatggtggagctgaagctgccgcccaccgacgcctactacaaactgcggcacatcgtg
gacgaggtcaacagcctgctcagcatgtactccacggatgagaacctgatcgtgtctccc
ttgctggggaacgtgtgcttctccagctcccagtacagcatctgcttcacgctgggctcc
ttcgccaagatctactccgatacctatggtgatatcagctacaatgagtttgcgaagagg
ctctggggagacatctacttcaaccccaaaacgagaaagttcaccaaaaaggctccaaac
agcagctcccagcgcagtttcgtggagtttgtcctggagcctctgtacaagatcctggcc
caggtggtgggtgatgttgatacctccctccctcgggtgctggatgagctggggatccac
ctgaccaaggaggaactcaaactgaacatccgcccgctgctgcgcctcgtctgcaagaag
ttcttcggggagttcacaggttttgtggacatgtgtgtgcaacatatcccttctcctcaa
gatggcgctaggaataagattgagcactcgtacaatgggggcctggactctgatttgggg
gaggccatggcagagtgcgaccctgacggcccgctgatgtgccacaccactaagatgtac
agcacggaggacggggtgcagttccatgccttcgggagggtcctgagtggcactatccat
gcggggcagcctgtcaaggtgctgggggagaactacaccctggaggacgaggaggactcc
cagatctgcaccattggccgcctctggatctccgtggccaggtaccagattgaagtgaac
agagtgcctgctggcaactgggtgctgatagaggggtgcgaccagcccatcgtcaagact
gccaccattacagagccgcggggcaacgaggaggctcagatctttaggcccctgaagttc
aacactgcctctgtgattaagatcgctgtggagcctgtcaacccctctgagctgcccaag
atgctggacggcctgaggaaggtcaacaagagctacccctccctcaccactaaggtggag
gaatcgggggagcatgtgatcctgggcactggggagctctacctggactgtgtgatgcac
gacctccgcaagatgtactctgagatcgacatcaaggtggcggacccggtggtgacgttc
tgtgagacagtggtagagacatcctcccttaagtgtttcgctgagacccccaacaagaaa
aacaagatcaccatgattgcagagcctctggagaaagggctagctgaggacatcgagaac
gaagtggtccagatcacatggaacaggaagaagcttggagaattcttccagacgaagtac
gactgggatctgctggcggctcgttcaatctgggcattcgggcctgacaccacgggtccc
aatattctggtcgatgacacactaccttcagaggtggacaaggctctgctgggctccgtg
aaggacagcatcgtgcagggcttccagtggggaaccagggaggggccgctgtgtgatgag
ccgatccgcaatgtgaagtttaagattctggacgcagtgatcgctcaggagccgctgcac
agaggaggaggacaggtcatccccacggcccgcagagtggtgtactccgctttcctcatg
gccacccctcgtctgatggagccctactactttgtggaggtccaggctccagctgactgt
gtctctgctgtctacaccgtgctggctcgcaggagaggtcatgtgacccaggatgccccc
atccctggctcccctctctacaccatcaaggccttcatcccagccatcgactcgttcggc
ttcgagacagacctgcgcactcacacccagggacaggccttctccctgtctgtgttccac
cactggcagattgtgccaggtgaccccctggataagagcatcgtgatccgtcctctggag
ccacagccggcccctcacctggccagagagttcatgatcaagactcgccgacgcaagggt
ctcagcgaggacgtcagcatcagcaagttcttcgatgatcccatgttgttggagctggca
aagcaggacgtggtactcaactatcccatgtag
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