Polyodon spathula (Mississippi paddlefish): 121324465
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Entry
121324465 CDS
T07273
Name
(RefSeq) sodium channel protein type 4 subunit alpha B-like
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121324465
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
121324465
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
121324465
NCBI-ProteinID:
XP_041122321
LinkDB
All DBs
Position
12:complement(42351779..42404796)
Genome browser
AA seq
1829 aa
AA seq
DB search
MACLLPPTGPDAFRRFTPESLAEINKRIIKEKSERERKQHVETVDEEEAKPSGNLEAGKP
LPFIYGDPPPEIIADPIEDLDPFYSAKKTFIVISKGKTIYRFNAEPACYILSPFNLIRRG
AIKILIHSLFSFIIMVTILTNCVFMAMSNPPAWSKNVEYAFTGIYTFEALVKVLARGFCI
GDFTFLRDPWNWLDFCVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVGAL
IQSVKKLADVMILTVFCLSVFALIGLQLFMGNLRQKCVKWPPPVNDTWVADGYSLGYNNT
DNSTVGGFDWNEYINNNDNYYFLEGSLDALLCGNSSDAGKCPEGFVCMKAGRNPNYGYTS
YDTFSWAFLSLFRLMTQDFWENLFQLTLRAAGKTYMIFFVVIIFLGSFYLINLILAVVAM
AYAEQNEATLAEAQEKEEEFQRILEQMKKQEGQMHSPAGTHDSHESLASNKVRKKGGGSG
HEFTDDEHSLGDDGDKIKDCNGKAMPRIVIDRVCTDEQSFAEDERSKKSGSQQNMTYLDE
PGLEKRTASALSVLTSAMEEREEVQQKCPPWWYKFATVVLIWDCCPLWVKFKEFLKFVVL
DPFVDLGITICIVLNTLFMAMEHYPMSPDFEEMLSVGNLVFTGIFAAEMVFKLIALDPYY
YFQTGWNIFDSIIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNS
VGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISLDCELPRWHMNDFFHAFLIIFR
VLCGEWIETMWDCMEVAGQGICLVLFMMVMVIGNLVVLNLFLALLLSSFSGDNLAGGDED
GEMNNLQIAIGRITRGIDFVKNAALGLIQSMLDKKPKEEEDDLKKDNFVLNHMVSGEDPK
SDLKCVDGVSGKDTQVVEEVDRTGFLVNSDLTISVPIALAESDFESPDEDHVSSDYETEE
TKQQKKGDVGTDDCKPPEAPEEVVTEETPEAEEPEACFTEGCIRRWPCLTFDITQGKGKN
WWTLRKTCFLIVEHNWFETFIIFMILMSSGALAFEDIYIEQRKVIKILLEYADQVFTYVF
VMEMLLKWTAYGFKTYFTNAWCWLDFLIVDVSLISLAANIMGYSELGPIKSLRTLRALRP
LRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNMFAGKYYKCVNVTSEE
LFSTLVVNNKTQCLELIEQNFTEVRWMNMKVNFDNVGMGYLSLLQVATFKGWMDIMYAAV
DSRKIEEQPSYEINLYMYMYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGTDIFMTE
EQKKYYNAMKKLGSKKPQKPIPRPQNAVQGVVFDIITKQAFDIFIMVLICLNMVTMMVET
DDQSAQKEEILYYINLVFIVIFTAECVLKIFALRHYFFTVGWNIFDFVVVILSVVGIMLA
DIIEKYFVSPTLFRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMF
IYSIFAMSNFAYVKHESGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPPDCD
PTIDHPGTDVKGNCGNPGMGMIFFTSYIIISFLVVVNMYIAIILENFNAATEESSDPLCE
DDFEMFYEIWEKFDPDASQFIEYSRLSDFCDTLLDPLKIPKPNKIKLICMDLPMVTGDKI
HCLDILFALTKEVLGDTGDMAALKESMEEKFKASNPSEVAYEPITTTLKRKQEEVAATVI
QRAYRRHLLNRSEKQAPYMQNGRHDTKEEREGPEKGGLIAEKMGENYGKAEAEVPKVVVE
VTDEVVPLCDPQTTASSTTSGGNIRESIV
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcctgctcccaccaacaggccctgatgccttccgacgcttcactccagagtcc
ctggccgagatcaataagcggatcattaaagagaaatctgaaagggaaaggaaacagcat
gtagagaccgtggacgaggaagaagccaagccgagcggcaaccttgaggccggcaaaccc
ctgccctttatatacggtgacccacctcccgaaatcattgcagatccaatagaggacttg
gatcccttttacagcgcaaaaaaaactttcatagtcattagtaaagggaagacaatctac
aggtttaatgctgagcctgcctgctacatactgagccctttcaatctgatccggagagga
gccatcaagattcttatacattcattgtttagttttatcatcatggtaaccattttaaca
aactgtgtgttcatggcaatgagcaaccctccggcctggagtaaaaatgtagagtatgct
tttacaggcatttatacctttgaagcactggtcaaggttttagcaagagggttctgtatt
ggtgattttacattccttcgagatccgtggaactggctggatttctgtgttattagtatg
gcgtatctcactgagtttgtggatttgggcaatgtttctgccctcaggactttccgtgta
ctacgagcacttaaaacaatcactgttattcctggattgaaaactatcgtgggcgctctg
attcagtcagtgaagaagcttgcagatgtgatgattctcactgtgttctgtctcagtgtt
tttgctctcattggtcttcagttgttcatgggtaacctacgacaaaagtgtgtcaaatgg
cccccgcctgtcaacgatacctgggttgccgatggctattccctgggttacaataacaca
gataatagcactgttggtggctttgactggaatgaatacatcaacaataatgacaactac
tattttcttgagggatctcttgacgcacttctctgtggaaacagctcagatgctggaaag
tgcccagaaggattcgtctgcatgaaggctggaaggaatccaaactatggctataccagc
tatgacacctttagctgggctttcctctccttgttccgtctcatgactcaggacttttgg
gagaacctctttcaactgacgctacgtgcagctggtaaaacctacatgatattctttgtg
gtgatcatcttcctgggttcgttctacctcatcaatctgatcctagctgtggttgccatg
gcctatgcagagcagaatgaagccacgctagcagaggcgcaggagaaagaagaggagttt
cagaggatcttagaacagatgaaaaagcaggagggacagatgcacagtccggcaggtaca
catgacagtcacgaatcacttgctagtaataaagttcggaaaaaaggtggcgggtcaggg
catgaattcactgacgatgaacacagccttggagacgatggagacaagatcaaagactgc
aatggaaaagctatgcccagaatcgtcattgacagggtctgtacagatgaacaatctttt
gctgaggatgaaaggagtaagaagtcaggatcccaacagaatatgacctatttagatgag
ccgggtcttgaaaaaagaacagccagtgctttgagtgtcctcaccagtgctatggaagag
agggaagaggttcagcagaagtgccccccctggtggtacaaatttgccactgtggtcctg
atttgggattgctgcccgctgtgggtcaaatttaaagagtttttgaagtttgtggtgctg
gacccctttgtggatctcggaatcacaatctgtattgtgctcaacacccttttcatggct
atggagcactaccccatgagtcctgattttgaggaaatgctctccgtgggaaacctggta
tttactggaatctttgctgctgaaatggtgttcaaactcattgccctggatccctactat
tactttcagactggttggaacatctttgacagtatcattgtcactctgagtttggtagag
ttggggcttgcagatgtcgagggtctctcagtgctgcggtcattccgtttacttcgtgtt
ttcaagcttgcaaaatcctggcccaccctgaacatgctcattaagatcattggcaactcc
gtgggtgctctgggcaacctgactttggttttggccattatcgttttcatcttcgctgtg
gtaggaatgcagctttttggaaaatcctacaaagattgcgtctgcaagatcagcctagat
tgtgaactgcctcgttggcacatgaatgatttttttcatgccttcttgattatattccga
gtcctgtgcggggagtggattgagaccatgtgggactgcatggaggtggcaggacagggc
atctgcctggtcctctttatgatggtcatggtgattgggaacttggtggttctgaacctc
tttttagccttgctgcttagctctttcagtggcgacaacctcgccggcggcgacgaagat
ggtgaaatgaataacctgcagattgccatcggcaggattactaggggtatcgactttgtg
aaaaacgcagccttggggctcattcagagcatgctggacaaaaagccaaaggaggaagag
gatgatctgaagaaggataactttgtgctcaatcacatggtctcgggagaggaccccaag
tcagatttgaagtgtgtggatggcgtgtctgggaaggacacgcaggtagtggaagaagta
gaccgcacaggatttctggttaattctgacttgaccattagtgtcccaattgctcttgct
gaatctgattttgaaagtccagatgaagaccatgttagctcagactatgagactgaagaa
actaaacaacagaagaaaggagatgtaggcacggatgattgcaagcctcctgaagctcca
gaggaggtagttacagaggagacccctgaagctgaagaaccagaagcatgcttcacagaa
ggctgcatccggcgatggccatgtttgacttttgacatcacacaaggcaaaggaaagaat
tggtggactttaagaaagacctgttttttaattgtggagcacaactggtttgaaaccttc
atcatctttatgattctgatgagcagcggtgcactggcatttgaagacatatatattgaa
cagcgaaaggtgataaagatcctcttggaatatgcagatcaagtgttcacctatgtattt
gttatggaaatgcttttaaagtggactgcatatggtttcaagacatatttcacgaacgct
tggtgctggctcgattttctcattgtggatgtttctttgatcagtttagcagcaaacata
atggggtattctgaactgggacccattaaatccctacggacgctgagagctttgagaccc
ttgagagcattgtcacggtttgagggcatgagggttgtggtgaacgctttggtcggtgcc
attccctcaatcatgaacgtcctgctggtttgtctcatcttctggctcatcttcagcatc
atgggagtcaacatgtttgctgggaagtactacaaatgtgttaatgtcacctctgaagaa
ttatttagtactttggtggtcaacaacaagactcagtgtctggagttaatagaacaaaat
ttcactgaagttcgctggatgaatatgaaggttaactttgacaatgtggggatgggatac
ctttcattattgcaagtggcaaccttcaagggctggatggacatcatgtatgctgcagtc
gactctcggaagattgaggaacaaccatcttatgaaatcaacctctacatgtacatgtac
tttgtcattttcatcatttttggagccttcttcactctcaacctcttcattggtgtcatc
attgacaacttcaatcagcaaaagaaaaagtttggagggacggacatcttcatgacagaa
gagcagaagaagtactacaatgccatgaaaaagcttggttcgaagaaaccacaaaagcct
attccaagaccacagaatgcagtccaaggagtggtatttgatataatcaccaaacaagcg
tttgacatcttcatcatggtccttatttgcctcaatatggtgaccatgatggttgaaaca
gatgaccagagtgcacagaaagaagaaatcctctattatatcaacctggtcttcattgtg
attttcactgcagagtgtgtcctcaaaatatttgcgctgaggcattattttttcactgtg
ggatggaatatttttgattttgttgtggtcattctttctgttgttggtattatgctggcc
gacatcatagaaaagtactttgtctcaccaacccttttcagagttatcagactggcgaga
attggtcgcgttttacgtctcattcggggggccaagggaatccgaaccctgctgtttgcc
ttgatgatgtcacttcctgctttgttcaacatcgggctgcttctcttcctggttatgttc
atatactcaatatttgcaatgtcaaacttcgcttacgtaaaacatgagtcaggcattgat
gacatatttaactttgagacgtttggaaacagtataatctgtttgttccaaatcaccact
tcagccggctgggacggtctcctcaaccctatcttaaacagcggccctccagattgtgac
cccactattgaccaccctgggactgatgtaaaagggaactgtggcaatccgggcatgggc
atgatattcttcaccagctatatcatcatttccttcctggttgttgtcaacatgtacatt
gccatcatcctggaaaacttcaacgcggccacagaggaaagcagcgatcctctttgtgag
gacgactttgagatgttttacgagatctgggagaaatttgaccccgatgccagccagttc
attgaatacagcaggctctccgacttttgcgacacgctcctagatccgctcaagatacca
aagccgaacaaaatcaaactgatatgcatggacctacccatggtcaccggggacaaaatt
cactgcctggatatcctgtttgctctaactaaagaggtgcttggagacacaggagacatg
gctgctctgaaggaatccatggaggagaaattcaaggcttccaatccatccgaggttgcc
tatgagcctatcaccacgaccctcaagaggaaacaagaggaagttgccgcgaccgtcata
cagcgagcatacaggaggcacctgctaaaccgctctgagaagcaagcgccttacatgcaa
aacggcaggcatgacacaaaggaggagagggagggtccagaaaaggggggtttaattgca
gaaaagatgggtgaaaactatgggaaagcagaggcagaggttccgaaggtggtggtggag
gtcacagatgaagtcgttccactttgtgatccacagaccactgcttcatccactacttca
ggaggaaacataagggaatctattgtataa
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integrated database retrieval system
