Polyodon spathula (Mississippi paddlefish): 121324582
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Entry
121324582 CDS
T07273
Name
(RefSeq) TNF receptor-associated factor 3-like
KO
K03174
TNF receptor-associated factor 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04620
Toll-like receptor signaling pathway
pspa04621
NOD-like receptor signaling pathway
pspa04622
RIG-I-like receptor signaling pathway
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121324582
04621 NOD-like receptor signaling pathway
121324582
04622 RIG-I-like receptor signaling pathway
121324582
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121324582
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
Sina_ZnF
zf-TRAF_2
MAD
CCDC22_CC
ATG16
zf-C3HC4
zf-C3HC4_2
MscS_porin
Fez1
KIF9
OVT1
CCDC90-like
DUF1664
AKNA
CALCOCO1
ATG17_like
TMF_TATA_bd
Seryl_tRNA_N
DUF724
Exonuc_VII_L
GAS
Motif
Other DBs
NCBI-GeneID:
121324582
NCBI-ProteinID:
XP_041122574
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All DBs
Position
12:complement(263374..288082)
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AA seq
584 aa
AA seq
DB search
MSAGRNVDLPLELQTQLQRFNPARPPPASRPGSMRSELSPSPSSSFMPLHRGFKDRFVQP
LEPKYRCESCRLALCNPRQTECGHRFCESCIRDLLCLQPPVCPADGEPLYEDKVFTDVCC
RREIMGLKVYCRNEKNGCKDQMTLQLLLEHLQDCPYCEITCPRAECKDTFLRKDVSDHLA
KKCKYRDTICTYCKRTVLLADQKKHEESLCPAFPVTCPNKCSYSSVLRSQLTNHQLECPN
AQANCIFTRYGCTFKGLNQDMKEHESSFMSEHLKLMVARNCSLETKMEDVKTELQERYKV
LPSLNTRIIELENRYEEVRDKSKQMEQKISNVQKLLGSHSEKVMEIEMELRLLRQAKDEV
ETLKSAVESIRSRVAVLEGSERGGGGGGAGTHALGPLETQLARHDDMLSVHEIRLADMDL
RFQVLETASYSGTLVWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYRMCARVYLNGDG
MGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPDPNSSSFKRP
AGDMNIASGCPLFVAQTVLENGTYIKDDTIFIKVVVDASDLPDP
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctggtaggaatgtggacttgcctctggaactgcagacccagctgcagcggttc
aacccggcccgccccccccctgcgtcacggccgggctcgatgcgctcggagctgagcccc
tccccctcctcctccttcatgccactccacagggggttcaaggaccgcttcgtccagccg
ctggagcccaagtaccgctgtgagtcgtgccgcctggccctgtgcaacccccggcagact
gagtgtgggcaccgcttctgtgagagctgcatccgggacctgctctgcctccaaccccca
gtctgtccagctgacggagagcctctctatgaggacaaagtttttaccgatgtgtgctgc
aggagagagatcatggggctcaaagtgtactgtcggaatgaaaagaacggctgcaaagac
cagatgacactccagcttcttctagaacatttacaagactgcccgtattgcgagatcaca
tgtccacgggcggaatgtaaagacacatttctacgaaaagacgtgtctgaccacttagca
aaaaaatgcaaatacagagacacgatatgcacttactgcaagaggacggtgctgctagca
gatcagaagaaacatgaagaatcgctctgtccagcctttcctgttacctgcccaaacaaa
tgtagctacagctctgttttacgaagtcagctaactaaccaccagcttgaatgccctaat
gcccaagcaaactgtatattcactcgctatggatgcacctttaagggattaaaccaagac
atgaaagagcatgagtcaagtttcatgagcgagcatctcaaactgatggtggcaagaaac
tgcagtctagagaccaagatggaggatgtgaagactgaactgcaggaaaggtacaaagtc
cttcccagtctgaacactcgaatcattgagctggaaaaccgatacgaggaagtgcgggac
aaatcaaagcaaatggaacagaagatcagtaacgtacagaagctgctgggatctcactct
gagaaggtgatggagatagagatggagctgcgcttgctcaggcaggcaaaggatgaggtg
gagactctgaagagcgcagtggagtcgatccgcagccgcgtggctgtgctggaggggagc
gagaggggaggaggaggaggcggggctgggacccacgcactgggccctctggagacacag
ctggcgaggcacgacgacatgctgagcgttcacgagatccgtctggctgacatggacctg
cgcttccaggtgctggagacggcgagctacagcgggacgctggtctggaagatcagggac
tacaagcggaggaagcaggaggcggtgatggggaagaccctgtcgctgtacagccaaccc
ttctacaccggatacttcggctacaggatgtgcgcccgggtctacctcaacggggacggg
atgggtaaaggcacccacctgtccttgttcttcgtggtgatgcgcggggagtacgatgcc
ttgctgccctggccattcaaacagaaagtcaccctcatgctgatggaccaggggcccgcc
aggaaacatttaggggatgccttcaagcccgaccccaacagcagcagctttaagcggccg
gcaggggacatgaacatcgcttctggctgcccgctttttgttgcccaaactgtgttagaa
aacgggacgtatatcaaagacgacaccatatttattaaagtggtggttgatgcttcagac
cttccggatccatga
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