Polyodon spathula (Mississippi paddlefish): 121324992
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Entry
121324992 CDS
T07273
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04115
p53 signaling pathway
pspa04145
Phagosome
pspa04148
Efferocytosis
pspa04350
TGF-beta signaling pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121324992
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121324992
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121324992
04148 Efferocytosis
121324992
09143 Cell growth and death
04115 p53 signaling pathway
121324992
09144 Cellular community - eukaryotes
04510 Focal adhesion
121324992
09142 Cell motility
04820 Cytoskeleton in muscle cells
121324992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121324992
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121324992
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Opsonins
121324992
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121324992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_ADAMTS
TSP1_CFP_C
cEGF
Laminin_G_2
EGF
Laminin_G_3
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
121324992
NCBI-ProteinID:
XP_041123190
LinkDB
All DBs
Position
12:16129093..16145669
Genome browser
AA seq
1171 aa
AA seq
DB search
MTLSEGLFLLLMLGIGEASRAAETGEDNSVFDLFEISRVARKNNGVALVKGPDPYSPAYK
ILNADLIPPVPETPFRDLLDAIHAEKGFLFLATLKQSKRSRGSLLAIEKLDGSGQVFEIV
SNGNAGTLDLVYTMEDKQHVVSLEDAELATGNWKNITLLVQEDRVQLYVGCDEIDTVEMD
ASIHRILTQELSDTARLRVGKGAIKDKFQGVLQNVRFVFGTTLEAILRNKGCSRSVTDTI
TLDNPVNGSSPAIRTDYIGHKTKDIQNVCGFSCDELANMFKELQGLRVIVTQLVDKVHKV
TEENELIQKTIQIRPGICIHNGIFHNNKEEWTVDGCTECTCQNSATVCRKISCPLMPCTN
ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRISSSCEGTSVQ
TRDCYIQECDKRFKQDGHWSHWSPWSSCSVSCGEGVITRIRLCNSPTPQMGGKDCVGEGR
QTEKCEKSPCPINGKWGPWSMWDTCTVTCGGGVQNRKRLCNNPPAKYGGKDCIGEPKESQ
LCNKDDCPVDGCLSNPCFAGSKCTSFPDGSWKCGPCPTGYQGNGVQCKDIDECKEVPNAC
FVFNDVHRCENTDPGYNCLPCPPRYSGEQPYGTGVEDATAKKQVCKPRNPCNDGTHDCNT
NARCIYLGHYTDPMFRCECKPGYAGNGYICGEDTDLDGWPNEELVCVENATYHCKKDNCP
DLPNSGQEDYDKDGTGDACDSDDDNDNVPDDRDNCQFIYNPRQYDYDRDDVGDRCDNCPY
NHNPDQADTDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNCPLE
HNPDQVDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDD
NDGIPDEKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFRK
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTERD
DDYAGFVFGYQSSARFYVVMWKQITQTYWSDSPTRAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGDTSGQVRTLWHDPRNVGWKDFTAYRWHLTHRPKTGHIRVVMYEGKRIMADSGAIY
DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacgttatctgaggggctgtttttgctcctaatgctgggcatcggtgaagcaagtcga
gctgcagaaactggagaagacaacagtgtatttgacctattcgaaatcagccgagtggca
cggaaaaacaacggcgtagcactcgtgaaaggaccagacccgtacagccccgcttacaag
attctcaacgcggacctgatccccccggttcccgagacccccttccgggacctgctagat
gccattcacgcggagaaggggtttctgttccttgctaccctgaagcagtccaagaggagc
cggggcagcctgctggccattgagaagctcgacgggtccggtcaggtcttcgagatcgtc
tcgaacggcaatgcgggcaccttggatctggtttacacaatggaggacaagcagcacgta
gtgtcgctggaagatgcggagctagcgaccggtaactggaagaacatcacgctgttagtg
caggaggaccgggtacagctgtacgtgggctgtgatgagattgacacagtcgagatggac
gcttccatccacagaatcctcacccaggagttgtctgacactgcccgactcagggtggga
aaaggagcgatcaaggacaagttccagggggtgctacagaacgtacgctttgtgtttgga
accactttggaagcaattctgagaaacaaagggtgctccagatctgtcactgacactatc
actttggacaaccccgttaatggatccagcccagctatcagaacagactacatcgggcac
aaaacaaaagacattcagaatgtgtgcggtttctcctgtgacgagctggccaacatgttc
aaggagctgcagggtctcagagtcatcgtcacccagctggtggataaagtgcacaaagtg
actgaagaaaatgaactcatccagaaaacaattcaaatccgacctggtatctgcatccac
aatggcatcttccacaacaataaggaggagtggacagtggacggctgcaccgaatgcacc
tgccagaactctgctacagtatgccgcaagatctcctgccccctcatgccctgtaccaat
gccacagttccagatggagagtgttgccctcgctgcggcaccccgagtgactctgcagag
gacggctggtccccttggtctgaatggactcattgttcagtgacctgtggaagaggtatc
cagcagaggggccgctcctgtgatcgtatcagcagcagctgcgagggcacctccgtgcag
acccgggactgctacatccaggaatgcgacaagagattcaaacaagatggacactggagc
cactggtccccgtggtcatcctgctcagtttcctgcggcgagggagtcattacccgaatt
cgcctgtgcaactcacccacccctcagatgggagggaaggactgtgtgggagagggcagg
cagaccgagaagtgtgagaaatcgccatgtccaatcaatggtaaatggggtccctggtcg
atgtgggatacctgcactgtcacctgcggaggaggggttcagaatcgcaagcgtctttgc
aataacccacctgctaagtatgggggcaaagactgcattggggagcccaaagagtcccag
ctctgcaacaaggacgactgccccgtcgatggttgcctgtccaacccttgcttcgctggg
tccaagtgcaccagcttccccgacggttcctggaagtgtgggccctgcccaactggctac
caaggcaacggagttcagtgcaaagatattgatgagtgtaaagaggtgcccaacgcttgc
ttcgtgtttaacgatgtccacagatgtgaaaacacagatcccggatacaactgccttcct
tgcccaccacgctattctggagagcagccctacggcacaggagtggaggacgccacagct
aaaaagcaggtctgcaagcctcgtaacccctgcaatgacggaacccacgactgcaatacg
aacgcccgctgtatctacctggggcactacacagatcccatgttccgttgcgagtgcaaa
cccggctatgctgggaatggatacatctgcggagaggacaccgacctggacggctggccc
aacgaggagcttgtgtgtgtggaaaacgccacctaccactgcaagaaggacaactgccca
gaccttcccaactccggtcaggaagattacgacaaggacggaaccggcgatgcctgcgat
agcgatgatgataatgataacgtcccagatgacagggacaactgccagttcatctacaac
ccccgtcagtatgactacgaccgtgatgatgttggtgatcgctgtgataactgcccctac
aaccacaaccctgaccaggccgacaccgacagcaacggggagggagatgcatgcgctgtg
gacatcgacggagacggtattctgaatgagaaggataactgcccctacgtttacaatgtt
gaccagagagatacagatttggacggggtgggagatcagtgcgataactgcccactggag
cacaaccctgaccaggtggattctgactctgaccgagttggggacaagtgtgacagcaac
caggacattgatgaagatggacaccagaacaacctggacaactgtccctacatccccaac
gccaaccaggccgaccacgacaaagatgggaagggtgatgcctgcgaccacgatgatgac
aatgatggcatcccagacgagaaagacaattgcagactggccttcaaccctgaccagctc
gactctgatggagatggacgcggagatgtctgcaaagatgactttgaccaagataacgtg
cctgatatctacgatgtctgcccagagaactttgacatcagtgagacagacttccgcaaa
ttccagatggtacccttggaccccaagggaacctcccagattgatcccaactgggtggtg
cggcatcagggcaaggagctggtgcaaaccgtcaactgcgaccctggcattgctgtcggt
tttgatgaattcaacgcagtggatttcagcggcaccttcttcatcaacaccgagcgagat
gacgactatgctggcttcgtgtttggctaccagtctagcgctcgcttctacgtggtcatg
tggaaacagatcacacagacctactggtccgactctcccaccagagctcagggatactca
gggctgtccattaaggtggtcaactccaccaccggtccaggggagcatctgcgtaacgca
ctgtggcatacgggcgacacttccggacaggtgcgcaccttgtggcatgaccctcgcaat
gttggatggaaagacttcacagcctatagatggcaccttacccacaggccaaagactggg
cacatcagagtcgtgatgtatgagggcaagagaataatggcagattctggagccatctat
gacaagacctatgccggtggtcgattgggtctgtttgtgttttctcaagaaatggtttac
ttctcagacctcaagtatgaatgcagagatgcataa
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