KEGG   Polyodon spathula (Mississippi paddlefish): 121326350
Entry
121326350         CDS       T07273                                 
Name
(RefSeq) period circadian protein homolog 2-like isoform X1
  KO
K02633  period circadian protein 2
Organism
pspa  Polyodon spathula (Mississippi paddlefish)
Brite
KEGG Orthology (KO) [BR:pspa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pspa03400]
    121326350
DNA repair and recombination proteins [BR:pspa03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    121326350
SSDB
Motif
Pfam: Period_C Per3-like_PAS-A bHLH_PER PAS_3 PAS_11 PAS PRIMA1
Other DBs
NCBI-GeneID: 121326350
NCBI-ProteinID: XP_041125517
LinkDB
Position
14:37093499..37114166
AA seq 1444 aa
MSEGYPYSTLEGQSTKRDRDFEDVPACSASRPRLHRMSSFSEARLEEAELVLHSDGSDSS
QDRRAPSPRQGLHDDMEMTSSGSSGNDSHGNESSGSSSGNGKDSALLESSESNKSAKSQS
PSPPSSSNAFSLLSASSEPDNPSTSGCSSEESAKAKTQKELLKTLKQLKVRLPSEKRAKG
KSSTLATLNYALRCVKQVKANEEYYQLLMINESQPSGLDVSSYTIEEIDNITSEYTLKNN
DIFAVAVSLITGKIVYISDQAACILNCKREVFRNAKFVEFLSPQDVSVFYSFTAPYRLPS
WSMCTGAESSPLDSIQEKSFFCRISGGQERAGEMLYCPFRMTPYLMKVQHSEHAEDHFSC
LLLAERVHSGYEAPRIPADKRIFTTTHTPSCMFEDVDERVVPLLGYLPQDLIGTPVLLYL
HPSDRHLMLAIHKKILQCAGQPFADHCATRFCARNGEYVTMDTSWSSFVNPWSRKVSFII
GRHTVRTGPVNEDVFAAPPFTEGKIIDSDIQEITEQIHRLLLQPVHSHGSSGYGSLGSYE
SREHLRSVASSSESFGHLNEESHQEKPRTFQEICKGVHMLKNQGQQVFIESRAKPEPKKH
SSAAEPQKDSKLRTKDTLLISGTGNAIGISEKTINSEEISNKEQTVYSYQQISCLESVIR
FLDSCNVPVTVKRKCVSSSNTASSNSDEDKQGVTDDSMQVSQADPPLLERQADLASLKSP
ENASAAAVVGASLTPLALPSKAESVVSITSQCSYSSTLVHVGDKKPQPESEITEEGQSGI
ELVESQPPAPPPPPPPPPPASVVPVVSQEKEAYKKRGLTKEVLAAHTQQEEQAFLSKFKE
PRGFHVFQSPCSFYLQEKHKGHKCAQGTQTPRQRGQGATELPFKKAGRNKKTKSKRLKQR
DSSDSTSSHNQQPNRPTLVGLNHTPWSPSETSQSSYPAMSFPTVVPAYPMPVLTAPGAML
SATSPSLSGFGDGQSAQDNCGQMHPPQYSAPLVTPMVAFVLPNYMFPQMNSAVHPSFYPG
QPSFPPHPTFSAQAAFPVPPTFPGQPQFGAPKSNVVQAYPQFPGQPFHYNMPMESEQRDG
PSRSSTPQSVGAQDQASPPLFQSRCSSPLQLNLLQLEETPKRVERQEQGPSAAFLGAAGT
AGDRDKGATTSKESEGLAHIHPGAVNSYGAPANIPIPSGSFYSRDQGLKSEENLVWDKVS
CRGCWNIEGESPGEGQVSDARSSSSDLIDILLQEDSRSGTGSAASGSGRSANSGSLGSAS
NGCGTSGSGTGSSQTSNTSKYFGSIDSSENDHQLKGKTGMEKKEAAGLVKYVLQDPMWLL
ISNADDSVMMTYQVPSRDFETVLKEDRDKLKQMQKAQPKFRTEQKRELVEVHPWFKKGAL
PEAIDVAECICSVESTQGVASSAFDEATQVIEPGAMIEPSEEGSLRTLSVTNEEQMNAEA
SPMP
NT seq 4335 nt   +upstreamnt  +downstreamnt
atgtcggaaggctatccctactccactttggaggggcagagcactaagcgtgaccgtgat
tttgaagatgtcccagcgtgttcagcgtccagaccccggctgcacagaatgagcagcttt
tcagaagccagacttgaggaggcagagcttgtgcttcactcagatggcagtgacagcagc
caggacaggagagccccctcgcccaggcagggcttgcacgacgacatggagatgacgagc
agcggctccagcggcaacgactcccacgggaatgaatcttcagggagttccagtgggaac
gggaaggattcagcgctattggaatcttcggagagcaataaaagcgcgaaatcccagagt
ccgtctccacccagcagctccaatgcattcagcctcctcagtgccagctctgagcctgac
aacccttccactagcggctgcagtagtgaagagtctgcgaaggccaagactcaaaaagag
ttgctgaaaactctgaagcagctgaaagtacgcctcccttctgaaaagagggccaaaggg
aaatccagcacactggctacgctgaattacgcactgcgctgtgtgaagcaagtcaaagct
aatgaggagtattaccagttactcatgatcaacgaaagccagccctctggtcttgatgtt
tcctcttacaccattgaagagatagacaacatcacatctgagtacacactgaaaaacaat
gatatatttgctgtggctgtctctctgatcacagggaagattgtttacatctccgatcaa
gctgcgtgcatcctgaactgtaagagagaggtgttcaggaatgccaagtttgtggagttc
ctgtcaccacaagacgtgagcgtgttctacagcttcacagcaccttacagactgccgtcc
tggagcatgtgtactggggccgagtcatctcctctagactccatacaggaaaaatctttt
ttctgtcggatcagcggcgggcaagagcgagcgggagaaatgctatactgcccattccgg
atgactccttacctgatgaaggtacagcactccgaacacgctgaggaccatttcagctgc
ctgctgcttgcagaaagagtacactctggatatgaagcacccaggattcctgcagataag
aggatctttaccaccacccacaccccaagctgcatgtttgaggatgtggatgaaagagtg
gtgccactgctgggttatcttcctcaggacttgatagggacacctgtgttgctgtatctg
caccccagcgacaggcatttgatgctggctatccacaaaaaaattttgcagtgtgcaggg
cagcccttcgcagatcattgtgcaactcgattttgtgctcggaacggagaatacgttact
atggataccagctggtctagttttgtcaacccttggagcaggaaggtgtcgtttatcata
ggaagacatacagtcagaaccggtcctgtaaatgaggatgtctttgccgctccgccattt
actgagggtaaaataatcgattctgatattcaggaaatcacagagcagattcacaggctt
ttgctccagccggtgcacagccatggctccagtgggtatgggagtttaggaagctacgag
tcacgtgaacatttaagaagtgtggcttcatccagtgagagctttggtcatctaaacgaa
gagtcacatcaggagaaacctagaacatttcaagagatctgtaaaggtgttcacatgctg
aagaaccaggggcagcaggtctttattgagtccagagctaaacccgagccgaagaaacac
agctctgctgctgaaccacaaaaggactcaaaattgaggaccaaagacactctcctgatc
tctgggactggtaatgcaataggtatttctgagaaaaccatcaactctgaagagataagc
aataaggaacagactgtttattcctaccagcaaatcagctgtcttgagagtgttatcagg
tttctggatagctgtaatgtcccagtcactgttaagaggaaatgtgtgtcctcctccaac
acggcatcttccaactctgacgaagacaagcagggtgtcactgacgacagcatgcaagtt
tctcaagcagacccgcccttgttagagcgtcaagctgatcttgcttcgttgaagtcgcct
gaaaacgcttctgcagcagcggttgttggtgcttcactgacacctcttgctttacccagc
aaggctgaaagtgttgtgtccattaccagccagtgtagttacagcagtacccttgttcac
gttggggacaagaaaccacagcctgaatccgaaataacagaagagggtcagagtggtatt
gaactggtggagagccagccccctgcccctccccctcctcctccccctccgcctccagcc
agtgtggtgccagtggtgagccaggagaaggaagcttacaagaagcggggcctcaccaaa
gaggtgctggcagcgcacacacagcaggaggagcaagcattcctcagcaagttcaaggag
ccccgggggttccacgtgtttcaatctccttgcagcttctacctgcaggagaagcacaag
gggcacaaatgtgcacaaggtacacaaacacccagacagagagggcagggtgccacagaa
ctcccctttaagaaggcagggagaaacaagaaaaccaagtctaagcgtttgaagcaacgt
gactcatcagacagcacctcttcacacaatcagcagccaaacaggcccactcttgtgggc
ctaaaccacaccccctggtccccctcagaaacctctcagtctagctaccctgctatgtcc
ttccccacggttgtgccagcgtacccaatgccagtcttgactgcaccaggagctatgctt
tcagccaccagcccatctctgtctggctttggggatgggcagagtgcccaggacaattgc
ggccaaatgcacccgccacagtattcggcacctttagttactccaatggtggcattcgtg
ctcccaaattatatgttcccacaaatgaacagtgcagtccatccgtccttttaccccgga
cagccctctttccccccacatccaacattctccgcccaagctgcgttccccgttccgccg
acattcccaggacagccccagtttggtgctcccaagtccaatgttgtccaggcgtacccc
cagtttcccgggcaaccgtttcattacaacatgccaatggagagtgagcagcgtgatggg
ccatcccgctcttctaccccccagtcggtcggggcacaggaccaagcctctccacctttg
ttccagtcgaggtgcagctctcctttgcagctgaatctccttcagctggaagagacgccc
aagcgggtggaacggcaggaacagggaccttctgccgcattcctaggggctgctgggact
gcaggagacagagacaaaggagccaccacgagcaaagagtcagagggcctggcacatatt
catcctggtgcagtaaactcgtatggagcacctgccaatattcctattccctcaggatcc
ttttattccagggatcaggggttaaagtcagaagaaaaccttgtatgggataaagtgagc
tgtagaggttgttggaacattgagggcgaatccccaggtgaaggccaggtcagtgatgcc
cgctcctcctccagtgatctgattgacatcctgctgcaggaagactcgcggtcaggtaca
gggtcggccgcctcaggcagcgggaggtcagcaaactcggggtccttgggctcagcttcc
aatggatgtggcacctcaggcagtggaacagggagcagccagaccagcaataccagcaag
tactttggaagcattgactcttctgagaacgaccaccaactgaaaggcaagaccggcatg
gaaaagaaagaagctgctggcttggttaaatacgtcctccaggatccgatgtggctgctg
atctcaaatgcagacgattcggtcatgatgacttatcaggtgccgtcacgagattttgag
acggttctcaaagaagacagagacaagctgaaacagatgcagaaagcccagcccaagttc
aggacggaacagaagagagagctggtggaagttcacccctggttcaagaagggcgccctg
cctgaagctatcgatgtcgcagaatgcatttgctctgtggagagtactcagggtgttgca
tcctctgcctttgacgaggctacacaggtcattgaacccggcgcaatgatcgaacccagt
gaggagggcagtttgaggacactgagtgttacaaacgaggagcaaatgaatgcagaagca
agcccaatgccctaa

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