Polyodon spathula (Mississippi paddlefish): 121328013
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Entry
121328013 CDS
T07273
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121328013 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121328013 (lig4)
Enzymes [BR:
pspa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121328013 (lig4)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121328013 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
121328013
NCBI-ProteinID:
XP_041128367
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All DBs
Position
15:12062153..12067781
Genome browser
AA seq
911 aa
AA seq
DB search
MAAAVQSVSSPQTTVASQVPFAHLCSTLEKIQKARPRPEKTKHFKDFLDSWRKFHAALHE
NAPNTTDSFYPAMRLILPQLERERMAYGIKENMLAKLYIEVLGLPKDGGDANKLLNYRTP
TTSQGDAGDFAVVAYFVLKTRCPVQGNLTIQQVNDFLDSVANNNASQRKDLVKKSLLQLI
PQSSALEQKWLIRMILKDMKLGISKETVLQIFHPDAIELHNVTTDLEKVCRQLHDPSVSL
SDVSIGLFSAFKPMLAAVADIKRIEKQMNNQSFYIETKLDGERMQLHKDGDVYKYYSRNG
YEYTQQFGASPLEGSLTPFIHNVFKVNIVNCILDGEMMAYNPTTQTFMQKGSKFDIKRMV
DDSELQTCFCVFDVLLVNGQKLAHETLRKRYETLQTVFTPVEGRVHIVPKIDARTNQEVV
NALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELDILIVGGYWGKGL
RGGMMSHFLCAVAETPPPGEKPSVFHSFCRIGSGYTMKELYDLGLKLANHWKLYRKKNPP
ASILCGTEKPEVYIDPCNSVIIQVKAAEIVDSDMYKTECTLRFPRIEKIRDDKEWHECMT
LKDLDSFCDKASGKLASRHIHLNDDLPEKKKRKLAPKPRKVIGVIDHFKPQDLSSVTKVT
DIFEDVEFCVISGNDEHSKAELEKGIAECGGDIVQNPGKETYCIIAGIENMRVKNLISAN
KYDVVQVNWLLECLKRKECMPWKPSHMIHMSPSTKQHFAKEYDCFGDSYYADTDKEQLKE
VFRRIKKTEAKLPLAAIADIEQRFSWDEVTTSLFRQYQVYVDCYSVIGDLGSLIHGTSLE
IRALELRFYGANVVSNLVEGVSHVVIGDQARVLELKAVRRKFAKKFKIVSELWVVDSVSE
GRLLNDNDYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcagtgcaatcagtgtcctcgcctcagactacagtcgcatctcaagttcct
tttgctcacctatgttcaactttagaaaaaatacagaaagccagaccaagaccagagaaa
acaaaacattttaaagactttctggattcttggagaaagttccatgctgctcttcatgag
aatgctccaaataccacagactcattctacccagcaatgcgtctcattctcccccaatta
gaaagggagagaatggcatatgggatcaaggagaatatgcttgcgaagctttacatagaa
gttttaggtctaccaaaagatggaggggatgcaaacaagcttctgaactatagaacccct
acaacctcccagggagacgctggggactttgctgttgttgcgtactttgttcttaagacc
aggtgcccagttcaaggaaacttaacaatacagcaggtcaatgatttcttggattctgtt
gccaataataatgctagccaaagaaaagacttagtaaaaaagagcctgctacagctaata
cctcagagttctgccctggagcaaaagtggctaatccgtatgattcttaaagacatgaaa
ttgggcattagtaaagaaactgtgcttcagatatttcatccagatgccattgaattacac
aatgtgaccacagatctagaaaaggtatgcagacaacttcatgacccgtcagtttctctc
agtgatgtctctattgggcttttctcagcatttaagcccatgctggcagctgttgcagac
ataaaacgaattgaaaagcaaatgaataaccaaagtttctacattgaaacaaagcttgac
ggtgagcgtatgcagttgcacaaagacggggatgtatataaatattactcccgcaatggg
tatgagtatacacagcaatttggagcctctccattggaaggttcattaactccatttatc
cataatgtctttaaggtcaatattgtaaactgcattttagatggtgagatgatggcttat
aatcccactactcaaaccttcatgcaaaaaggcagcaagtttgacattaaaagaatggtt
gatgattcagaattgcaaacctgtttttgcgtgtttgatgtgctgttggtaaatggacag
aaactggcccatgagacgctccgaaaacgatacgagacccttcagaccgtctttaccccc
gtagagggcagagtacatattgtacccaaaattgacgcaaggactaatcaggaagttgtt
aatgccctgaatgaagcaattgacaaccgagaggaaggaatcatggttaaagatccaatg
tctatttacaaaccagataagcgtggtgaagggtggctgaaaattaaaccagagtatgta
gatgggttgatggatgaacttgacatcttgattgttgggggatactgggggaaaggctta
cggggtggaatgatgtctcattttctgtgtgctgtagccgaaacccctccaccgggagaa
aagccgtcagtgtttcactctttttgccgtattggttcaggatacactatgaaggagctt
tacgaccttggcttaaaactggcaaatcactggaaactctaccgcaagaaaaaccctcca
gcttctattttatgtggtactgaaaagccagaggtgtacattgatccatgcaattctgtg
atcattcaggtaaaggctgctgaaattgttgacagtgatatgtataaaactgagtgcact
ttgcgttttccaaggatagaaaaaataagggatgacaaggagtggcacgagtgcatgacc
ctcaaagatttggacagtttttgtgataaagcctcaggaaagctggcatccaggcatatt
catttgaatgatgacctaccagaaaagaagaaaaggaaacttgcacccaaaccaaggaaa
gtgatcggtgtaattgatcatttcaagccccaggacctttccagtgtcaccaaagttact
gacatatttgaggatgtggagttttgcgtcataagtggaaatgatgagcattcaaaagca
gagcttgaaaagggaattgctgaatgtggtggagatattgtccaaaaccctgggaaagaa
acatactgcattattgctggcatagaaaacatgagggtgaaaaatcttatctctgcaaat
aagtatgatgttgtacaagtcaactggcttttggagtgcctgaagaggaaggagtgcatg
ccgtggaagcccagtcacatgatccacatgtccccatctacaaagcagcactttgcaaaa
gaatatgattgctttggggacagttattatgcagacactgacaaagagcaactaaaggaa
gtatttaggaggattaaaaagacagaagctaagctacctctggctgccattgcagatata
gaacagagattttcatgggatgaagttacaacaagcctgttcagacagtatcaagtttat
gttgattgttattctgtcattggtgatcttggaagcttaatccatggaacaagtttggaa
ataagggctctggagctcagattttatggggctaatgttgtctccaaccttgtggaagga
gtttcacacgttgtcatcggtgatcaagcccgtgttctcgagctgaaggctgttaggaga
aagtttgctaagaagtttaagatagtgtcagaattatgggttgtggactctgtaagtgaa
ggacgtttgttgaatgacaatgattacttagtttaa
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