Polyodon spathula (Mississippi paddlefish): 121329482
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Entry
121329482 CDS
T07273
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04115
p53 signaling pathway
pspa04145
Phagosome
pspa04148
Efferocytosis
pspa04350
TGF-beta signaling pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
121329482
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121329482
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
121329482
04148 Efferocytosis
121329482
09143 Cell growth and death
04115 p53 signaling pathway
121329482
09144 Cellular community - eukaryotes
04510 Focal adhesion
121329482
09142 Cell motility
04820 Cytoskeleton in muscle cells
121329482
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pspa04131
]
121329482
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121329482
Membrane trafficking [BR:
pspa04131
]
Endocytosis
Phagocytosis
Opsonins
121329482
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121329482
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
TSP1_CFP_C
cEGF
TSP1_ADAMTS
EGF
Laminin_G_2
Laminin_G_3
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
121329482
NCBI-ProteinID:
XP_041130981
LinkDB
All DBs
Position
17:complement(20983933..20999820)
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AA seq
1171 aa
AA seq
DB search
MTLSEGLFLLLMLGICEASRAAETGEDNSVFDLFEISRVARKNNGVALVKGPDPYSPAYK
ILNADLIPSVPETPFRDLMDAIHAEKGFLFLANLKQSKRSRGSLLAIEKLDGSGQVFEIV
SNGNAGTLDLVYTIEDKQHVVSLEDAELATGNWKNITLLVQEDRVQLYVGCDEIDSVEMD
ASIHRILTQELLDTARLRVGKGAVKDKFQGVLQNVRFVFGTTLEAILRNKGCSRSVTDTI
TLDNPVNGSSPAIRTDYIGHKTKDIQNVCGFSCDELANMFKELQGLRVIVTQLVDKVHKV
TEENELIQKTIQIRPGICIHNGIFHNNKEEWTVDGCTECTCQNSATVCREISCPLMPCAN
ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVTCGRGIQQRGRSCDRISSSCEGTSVQ
TRDCYIQECDKRFKQDGHWSHWSPWSSCSVSCGAGVITRIRLCNSPTPQMGGKDCVGEGR
QTEKCQKSPCPINGKWGPWSVWDTCTVTCGGGVQKRKRLCNNPPAKYGGKDCIGEPKESQ
LCNKNDCPVDGCLSNPCFAGSKCTSFTDGSWKCGPCPTGYQGNGVQCKDIDECKEVPNAC
FVFNDVHRCENTDPGYNCLPCPPRYSGEQPYGRGVEDATAKKQVCKPRNPCNDGTHDCNE
NARCIYLGHYTEPMFRCECKPGYAGNGHICGEDTDLDGWPNEELVCVENATYHCKKDNCP
NLPNSGQEDYDKDGTGDACDNDDDNDNVPDDRDNCQFVYNPRQYDYDRDDVGDRCDNCPY
NHNPDQADTDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDQCDNCPLE
HNPDQVDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDD
NDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDNVPDIYDVCPENFDISETDFRK
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNAVDFSGTFFINTERD
DDYAGFVFGYQSSARFYVVMWKQITQTYWSDSPTRAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGDTSGQVRTLWHDPRNVGWKDFTAYRWHLTHRPKTGHIRVVMYEGKRIMADSGAIY
DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgacgttatctgaggggctgtttttgctgctaatgctgggcatctgtgaagcaagtcga
gctgcagaaactggagaagacaatagtgtatttgacctattcgaaatcagccgagttgca
cgaaaaaacaacggcgttgcacttgtgaaaggaccagacccgtacagccccgcttacaag
attctcaacgcggacctgatcccctcggttcccgaaacccccttccgggacctgatggat
gccattcacgcggagaaagggtttctgtttcttgctaacctgaagcagtccaagaggagc
cggggcagcctgctggccattgagaagctcgacgggtcaggccaggtcttcgagatcgtc
tcgaacggcaatgcgggcaccttggatctggtttacaccatcgaggacaagcagcacgta
gtgtcgctggaagatgcggagctagcgaccggtaactggaagaatatcacgctgttagtg
caggaggaccgggtacagctgtacgtgggctgtgatgagattgactcagtcgagatggac
gcttccatccacagaatcctcacccaggagttgcttgacactgcccgactcagggtggga
aaaggggcggtcaaggacaagtttcagggggtgctacagaacgtacgctttgtgtttgga
accactttggaagcaattctgagaaacaaagggtgttccagatctgtcactgacactatc
actttggacaaccccgttaatggatccagcccggctatcagaacagactacatcgggcac
aaaaccaaagacattcagaatgtgtgcggcttctcctgtgatgagctggccaacatgttc
aaggagctgcagggtctccgagtcatcgtcacccagctggtggataaagtgcacaaagtg
actgaagaaaatgaactcatccagaaaacaattcaaatccgacctggtatctgcatccac
aatggcatcttccacaacaataaggaggagtggacagtggacggctgcaccgaatgcacc
tgccagaactctgctacagtgtgccgcgagatctcctgccccctcatgccctgtgccaat
gctacagttccagacggagagtgttgccctcgctgcggcaccccgagtgactctgcagag
gacggctggtccccttggtctgaatggactcattgttcagtgacctgtggaagaggtatc
cagcagaggggccgctcctgtgatcgtatcagcagcagctgcgagggcacctccgtgcag
acccgggactgctacatccaggaatgcgacaagagattcaaacaagatggacactggagc
cactggtccccttggtcgtcctgctcagtttcctgcggcgctggagtcattacccgaatc
cgcctgtgcaactcacccacccctcagatgggagggaaggactgtgtgggagagggcagg
cagactgagaagtgtcagaaatcaccatgtccaatcaatggtaaatggggtccctggtca
gtgtgggatacttgcactgtcacatgcggaggaggggttcagaagcgcaagcgtctttgc
aataacccacctgctaagtatgggggcaaagactgcattggggagcccaaagagtcccag
ctttgcaacaagaacgactgccctgtcgatggttgcctgtccaacccttgcttcgctggg
tccaagtgcaccagcttcaccgatggctcttggaagtgcgggccctgcccaactggctac
caaggcaacggagttcagtgcaaagatattgatgagtgtaaagaggtgcccaacgcctgc
ttcgtgtttaacgacgtccacagatgtgaaaacacagatcccggatacaactgcctgcct
tgcccgccacgctattctggggagcagccctacggccgaggagtggaggacgccacagct
aaaaagcaggtctgcaagcctcgtaacccctgcaatgacggaacccacgactgcaatgag
aacgcccgctgtatctacttggggcactacacagaacccatgttccgctgcgagtgcaaa
cctggctatgctgggaacggacacatctgcggagaggataccgacctggacggctggccc
aacgaggagcttgtgtgtgtggaaaacgccacctaccactgcaagaaggacaactgccca
aaccttcccaactccggtcaagaagattacgataaggacggaaccggcgatgcctgcgat
aacgacgacgataatgacaacgtcccagatgacagggacaactgccagttcgtctacaac
ccacgtcagtatgactatgaccgtgacgatgttggtgatcgctgtgataactgcccatac
aaccacaaccctgaccaggccgacaccgacagcaacggggagggagatgcatgcgccgtg
gacatcgacggagacggtattctgaatgagaaggataactgcccctacgtttacaatgtt
gaccagagagatacagatttggacggggtgggagatcagtgcgataactgcccactggag
cacaaccctgaccaggtggattctgactctgaccgagttggagacaagtgtgacagtaac
caggacattgatgaagatggacaccagaacaacctggacaactgtccctacatccccaac
gccaaccaggccgaccacgacaaagacgggaaaggtgatgcctgcgaccacgatgatgac
aatgacggcatcccagacgacaaagacaactgcagactggccttcaaccctgaccagctc
gactctgatggagatggacgcggagatgtctgcaaagacgactttgaccaagataacgtg
cctgatatctacgacgtctgcccagagaactttgacatcagtgagactgacttccgcaaa
ttccagatggtacccctggaccccaaaggaacctcccagattgatcccaactgggtggtg
cggcatcagggcaaggagctggtgcaaaccgtcaactgcgaccctggcattgctgttggt
tttgatgaattcaacgcagtggatttcagcggcaccttcttcatcaacaccgagcgagat
gacgactacgctggctttgtgtttggctaccagtccagcgctcgcttctacgtggtcatg
tggaagcagatcacacagacctactggtccgactctcccacaagagctcagggatactca
gggctgtccattaaggtggtcaactccaccacaggtccaggggagcatctgcgtaatgca
ctgtggcacacaggcgacacttccggacaggtgcgcaccttgtggcacgaccctcgcaat
gttggctggaaagacttcacagcctacagatggcaccttacccacaggccaaagactggg
cacatcagagtcgtgatgtatgagggcaagagaataatggcagattctggagccatctat
gacaagacctatgccggtggtcgattgggtctgtttgtgttttctcaagaaatggtttac
ttctcagacctcaagtatgaatgcagagatgcataa
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integrated database retrieval system
