Polyodon spathula (Mississippi paddlefish): 121329926
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Entry
121329926 CDS
T07273
Name
(RefSeq) oxysterols receptor LXR-alpha-like
KO
K08536
liver X receptor alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03320
PPAR signaling pathway
pspa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
121329926
09150 Organismal Systems
09152 Endocrine system
03320 PPAR signaling pathway
121329926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pspa03000
]
121329926
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
pspa03310
]
121329926
Transcription factors [BR:
pspa03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121329926
Nuclear receptors [BR:
pspa03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
121329926
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GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Motif
Other DBs
NCBI-GeneID:
121329926
NCBI-ProteinID:
XP_041131940
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Position
17:complement(3390558..3410897)
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AA seq
472 aa
AA seq
DB search
MSALSATSITDVANGESKEFVSTCELQLDSSTEDSSSGLLTECRHDSSHPSRFNGTVLCP
AQDHGTDLSSQDLSPSPLICAVTMDPTDRMKLEVAANILAANTGCQPMKRKKGPAPKMLG
NEVCSVCGDKASGFHYNVLSCEGCKGFFRRSVIKSAQYACKNGSRCEMDMYMRRKCQECR
LRKCREAGMLEQCVLSEEQIRLKKMKRQEDETARASTLPQNHLPGAEAPKLAPEQLEMIK
KLVTVQKQCNKSSFIDRLKVTPWPQSQDPLNREVRQQRFAHFTELAIMSVQEIVDFAKQL
PGFLELTREDQIALLKTSTIEIMLLETSRRYNPDIECITFLKDFSYNREDFAKAGLQLEF
INPIFEFSKGMNYLHLDEAEFALLIAINIFSADRPNVQDHDLVERFQQPYVDALHSYTRI
KRPNDHLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVHE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcattgtctgcgactagtatcactgatgttgctaatggagaaagcaaagagttt
gtgtcaacctgtgagctgcagctggactccagcacagaggattcaagcagcggcctgctg
actgagtgcaggcatgactcctcccacccttccagattcaacgggacagtgctctgccct
gcccaggaccatgggactgacctctcctcgcaggatctctcccccagccctctgatctgt
gctgtgaccatggaccccactgacaggatgaagctcgaagtggctgccaacatcctggct
gctaacacaggatgtcagcccatgaagcgcaagaagggcccggccccgaagatgctgggg
aacgaggtgtgcagcgtgtgcggggacaaggcctcgggcttccactacaacgtgctgagc
tgcgagggctgcaagggcttcttccgccgcagcgtgatcaagagcgcgcagtacgcctgc
aagaacggcagccggtgcgagatggacatgtatatgcgccgcaagtgccaggagtgccgg
ctccgcaagtgcagggaggcgggcatgctggagcagtgcgtgctatcggaagagcagatc
cggttaaagaagatgaagaggcaggaagatgagacggccagggcgtcgaccctgccccag
aatcaccttccaggggcagaagcacccaagctcgcacccgagcagttagagatgatcaag
aaactggtgacagttcagaaacagtgtaataagagttccttcattgatcgcctcaaagtg
acgccatggccccagagccaagacccgctgaaccgggaagtgcggcagcagcgcttcgct
cacttcacagagctggccatcatgtctgtgcaggagatcgtggactttgccaagcagctg
cctggattcctggagctcacccgcgaggaccagatcgcactgctcaagacttccaccatc
gagattatgctgttggaaacatccaggagatacaacccagacatagagtgcatcaccttc
ctcaaggacttcagctacaacagggaagactttgcaaaagcaggtctgcagttggagttt
atcaaccccatttttgagttctccaaggggatgaactacctgcatttagatgaagccgag
tttgcccttctgatcgcaatcaacatcttctctgcagaccgcccaaacgtgcaagaccac
gatttggtggaacggttccagcagccgtatgttgatgcacttcattcctacaccaggatc
aagagaccaaatgatcacctgatgttcccccgcatgttgatgaagctggtgagccttcgc
accctcagcagtgtccactcggagcaggtcttcgctctgcggctccaggacaagaagctg
ccgcctctcctgtctgaaatctgggatgtccacgaatga
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