Polyodon spathula (Mississippi paddlefish): 121330118
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Entry
121330118 CDS
T07273
Name
(RefSeq) TNF receptor-associated factor 3-like
KO
K03174
TNF receptor-associated factor 3
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04620
Toll-like receptor signaling pathway
pspa04621
NOD-like receptor signaling pathway
pspa04622
RIG-I-like receptor signaling pathway
pspa05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
121330118
04621 NOD-like receptor signaling pathway
121330118
04622 RIG-I-like receptor signaling pathway
121330118
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
121330118
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
Sina_ZnF
ATG16
zf-C3HC4
CCDC22_CC
MscS_porin
zf-TRAF_2
Fez1
CALCOCO1
KIF9
OVT1
CCDC90-like
AKNA
AAA_13
ATG17_like
DUF724
TMF_TATA_bd
Motif
Other DBs
NCBI-GeneID:
121330118
NCBI-ProteinID:
XP_041132333
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All DBs
Position
17:37635067..37666673
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AA seq
593 aa
AA seq
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MSAGRNVDLPLELQTQLQRFNPVRPSPASRPGSMRSELSPSPSSSFMPLHRGFKDRFVQP
LEPKYCCESCRLALCNPRQTECGHRFCESCIRDLLCLQPPVCPADGEPLYEDKVFTDVCC
RREIMGLKVYCRNEKNGCKDQMTLQLLLEHLQDCLYCEITCPRAECKDTFLRKDVSDHLA
KKCKYRDTICTYCKRTVLLADQKKHEESLCPAFPVTCPNKCSYSSVLRSQLTNHQHECPN
AQANCIFTRYGCTFKGLNQDMKEHESSFMSEHLKLMVARNCSLETKMEDVKTELQERYKV
LPSLNTRIIELENRYEEVRDKSKQMEQKISNVQKLLGSHSEKVMEMEMELRLLRQAKDEV
ETLKSAVELIRSRVAVLEGSGRGGGGGGGGGGGGGGGAGTHALGPLETQLARHDDMLSVH
EIRLADMDLRFQVLETASYSGTLVWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYRMC
ARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPARKHLGDAFKPD
PNSSSFKRPAGDMNIASGCPLFVAQTVLENGTYIKDDTIFIKVVVDASDLPDP
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctggtaggaatgtggacttgcctctggaactgcagacccagctgcagcggttc
aacccggtccgcccctcccctgcgtcgcggccgggctccatgcgctcggagctgagcccc
tccccctcctcctccttcatgccactccacagggggttcaaggaccgcttcgtccagccg
ctggagcccaagtactgctgtgagtcgtgccgcctggccctgtgcaacccccggcagact
gagtgcgggcaccgcttctgtgagagctgcatccgggacctgctctgcctccaaccccca
gtctgtccagctgacggagagcctctctatgaggacaaagtttttaccgatgtgtgctgc
aggagagagatcatggggctcaaagtgtactgtcggaatgaaaagaacggctgcaaagac
cagatgacactccagcttcttctagaacatttacaagactgcctgtattgcgagatcaca
tgtccacgggcggaatgtaaagacacatttctacgaaaagacgtgtctgaccacttagca
aaaaaatgcaaatacagagacacaatatgcacttactgcaagaggacggtgctgctagca
gatcagaagaaacatgaagaatcgctctgtccagcctttcctgttacctgcccaaacaaa
tgtagctacagctctgttttacgaagtcagctaactaaccaccagcatgaatgccctaac
gcccaagcaaactgtatattcactcgctatggatgcacctttaagggattaaaccaagac
atgaaagagcatgagtcaagcttcatgagcgagcatctcaaactgatggtggcaagaaac
tgcagtctagagaccaagatggaggatgtgaagactgaactgcaggaaaggtacaaagtc
cttcccagtctgaacactcgaatcattgagctggaaaaccgatacgaggaagtgcgggac
aaatcaaagcaaatggaacagaagatcagtaacgtacagaagctgctgggatctcactct
gagaaggtgatggagatggagatggagctgcgcttgctcaggcaggcgaaggatgaggtg
gagactctgaagagcgcagtggagttgatccgcagccgcgtggctgtgctggaggggagt
gggaggggaggaggaggaggaggaggaggaggaggaggtggcggtggaggagccgggacc
cacgcactgggccctctggagacacagctggcgaggcacgacgacatgctgagcgttcac
gagatccgtctggctgacatggacctgcgcttccaggtgctggagacggcgagctacagc
gggacgctggtctggaagatcagggactacaagaggaggaagcaggaggcggtgatgggg
aagaccctgtcgctgtacagccaacccttctacaccggatacttcggctacaggatgtgc
gcccgggtctacctcaacggggacgggatgggtaaaggcacccacctgtccttgttcttc
gtggtgatgcgcggggagtacgatgccttgctgccctggccattcaaacagaaagtcacc
ctcatgctgatggaccaggggcccgccaggaaacatttaggggatgccttcaagcccgac
cccaacagcagcagctttaagcggccggcaggggacatgaacatcgcttctggctgcccg
ctttttgttgcccaaactgtgttagaaaacgggacgtatatcaaagacgacaccatattt
attaaagtggtggttgatgcttcagacctgccagatccatga
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