Pseudoalteromonas spongiae: PSPO_a1981
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Entry
PSPO_a1981 CDS
T05098
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pspo
Pseudoalteromonas spongiae
Pathway
pspo03030
DNA replication
pspo03410
Base excision repair
pspo03420
Nucleotide excision repair
pspo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSPO_a1981 (ligA)
03410 Base excision repair
PSPO_a1981 (ligA)
03420 Nucleotide excision repair
PSPO_a1981 (ligA)
03430 Mismatch repair
PSPO_a1981 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pspo03032
]
PSPO_a1981 (ligA)
03400 DNA repair and recombination proteins [BR:
pspo03400
]
PSPO_a1981 (ligA)
Enzymes [BR:
pspo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSPO_a1981 (ligA)
DNA replication proteins [BR:
pspo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSPO_a1981 (ligA)
DNA repair and recombination proteins [BR:
pspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSPO_a1981 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPO_a1981 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSPO_a1981 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSPO_a1981 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ATC98997
UniProt:
A0A290T575
LinkDB
All DBs
Position
I:complement(1876280..1878292)
Genome browser
AA seq
670 aa
AA seq
DB search
MSAAEQINQLKAQIENYNYQYYVLDNPTVPDAEYDRLMRELIALEEANPALKSADSPSQK
VGGMALAAFEKVNHEVPMLSLDNAFDESEFYAFDKRMKDRLKDASDLAFCCEPKLDGLAV
SILYENGVLVRAATRGDGQVGENITENVKTIRNVPLRLRGDSIPARLEVRGEVFIDDKGF
AKLNQTQQEKGDKTFANPRNAAAGSLRQLDPKITASRPLMLYAYSTGVVEGFELAATHYE
QLMQLKEWGLPVCPEIRTADNAKDAFAYYSDILARRAALGYEIDGVVIKVNDKAIQQTLG
FVARAPRWAIACKFPAQEELTTLLDVEFQVGRTGAITPVARLEPVYVGGVTVSNATLHNA
DEIERLGVHIGDTVIIRRAGDVIPQVASVVLDRRPENSKEIVFPIACPVCESHVERIDGE
AVARCSGGLVCEAQRKEAIKHFASRKALDVDGLGDKVVEQLVDRKLIQTPADLFSLSQGH
IESLERMGPKSAENLVAALEKAKQTTLAKFLYSLGIREVGEATAQNLANHYKTLDALQNA
SIEGLQDVSDVGEIVAKHVYYFFKEEHNQEVIDALIAAGLQWPDIEEKSQDEMPLDGLTY
VLTGTLNQMGRSEAKAKLQALGAKVSGSVSAKTHALVAGEKAGSKLTKAQDLGVDVLTED
DMLVLFAKYE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggctgaacaaataaaccaacttaaagcacaaattgaaaattacaattatcaa
tactatgtgctagataatccgacggtaccggacgctgagtatgaccgtttaatgcgtgag
ctgattgcgttagaagaggcaaatccagcgcttaaatcagcagattcgccaagtcagaaa
gtcggcggtatggcgcttgctgcatttgaaaaagtaaaccacgaagtaccgatgttgtcg
cttgataatgcgtttgatgaaagtgagttttacgcatttgataaacgtatgaaagacaga
ctaaaagatgctagtgatttagcgttttgctgtgagccaaagctcgatggtttagccgtg
tctatcttgtatgaaaacggtgtattagtgcgcgctgcaacgcgtggtgatggtcaggta
ggtgagaacattaccgaaaatgtaaaaactattcgcaacgtgccgctacgtttgcgtggt
gattcaattccagcgcgtttagaagtacgcggagaagtgtttattgacgataaagggttt
gccaaacttaaccaaacgcaacaagaaaaaggggataaaacctttgctaacccgcgtaat
gcagctgcaggtagtttacgtcaattagaccctaaaattactgcatctcgcccactgatg
ctttacgcctacagcacaggcgtagttgaagggtttgagctggcagcaacccattatgag
caattaatgcagctaaaagagtggggcttaccagtatgccctgagattcgcactgcagac
aatgccaaagacgcctttgcctattattcagatattcttgctcgtcgtgccgcgctaggc
tacgaaattgacggcgtagtaatcaaagttaacgataaagcgattcagcaaactttaggt
tttgtcgcccgcgcaccgcgttgggcaatagcttgtaagtttcctgcacaggaagaatta
accaccttattagatgttgagtttcaagtaggccgcaccggcgcaattacgccggttgca
cgcttggagccagtttatgttggcggtgtaacagtatctaacgccaccttacataatgcc
gatgaaattgaacgcctaggcgtacacattggtgatactgtgattattcgccgcgcagga
gatgtgatcccgcaagtcgcaagtgtcgtgcttgatcgccgcccagaaaatagtaaagaa
attgtatttccgatagcgtgtcctgtatgtgaatcgcacgttgaacgtattgatggcgaa
gcggttgcccgttgtagcggtggcttggtgtgtgaagcgcagcgcaaagaggcgattaag
cactttgcttcacgtaaagcgctcgatgtagatggtttaggtgataaagtagtggagcag
ttagttgatcgtaaactgatccaaactccagctgacttatttagtttaagccaaggccat
attgagtcgcttgagcgtatgggaccaaagtcggccgagaatttagttgcggcacttgaa
aaagccaagcaaaccacacttgctaagtttttatattcactgggtattcgtgaagtaggt
gaggcgacagcgcaaaatttagcgaatcattacaaaacccttgatgcattacaaaacgcc
tcaatagagggcttacaggacgtttctgacgtaggtgagattgttgctaagcacgtttat
tacttctttaaagaagaacataaccaagaggtgattgacgcattaatcgctgctggcttg
cagtggccagatatcgaagaaaagtcacaagatgaaatgccgttggatggtttaacttat
gtgctaacaggtacactaaatcaaatggggcgcagcgaagcaaaagctaaacttcaagca
ctcggtgcaaaagtgtcgggcagtgtctccgctaaaacacacgctttagtcgctggtgaa
aaagcaggctctaagctcactaaagcacaagacttaggtgttgatgtgttgacggaagat
gacatgctagtcctttttgcgaagtacgagtaa
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