Pseudoalteromonas sp. PS1M3: PS1M3_20630
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Entry
PS1M3_20630 CDS
T11044
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psps Pseudoalteromonas sp. PS1M3
Pathway
psps03030
DNA replication
psps03410
Base excision repair
psps03420
Nucleotide excision repair
psps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PS1M3_20630 (ligA)
03410 Base excision repair
PS1M3_20630 (ligA)
03420 Nucleotide excision repair
PS1M3_20630 (ligA)
03430 Mismatch repair
PS1M3_20630 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psps03032
]
PS1M3_20630 (ligA)
03400 DNA repair and recombination proteins [BR:
psps03400
]
PS1M3_20630 (ligA)
Enzymes [BR:
psps01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PS1M3_20630 (ligA)
DNA replication proteins [BR:
psps03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PS1M3_20630 (ligA)
DNA repair and recombination proteins [BR:
psps03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PS1M3_20630 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PS1M3_20630 (ligA)
MMR (mismatch excision repair)
DNA ligase
PS1M3_20630 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PS1M3_20630 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
BBW91976
LinkDB
All DBs
Position
1:complement(2280231..2282249)
Genome browser
AA seq
672 aa
AA seq
DB search
MSSSISEQINHLRTLLEQHNYNYYVLDTPSIPDAEYDRLLRELSALETQNPEFLSADSPT
QKVGGAALSKFEQVAHQVPMLSLDNAFSEDEFTGFNRRIKERLMSTDELTFCCEPKLDGL
AVSIIYRDGVLVQAATRGDGFTGENITQNVKTIRNVPLKLRGDYPKELEVRGEVFMDSAG
FEKLNNEAQKRGEKVFVNPRNAAAGSLRQLDSKITAKRPLMFYAYSTGLVADGSIPEDHF
QQLEKLTDWGLPLCPETKLVEGPQAALDYYDDILTRRSELKYEIDGVVIKVNKKALQERL
GFVARAPRWAIAYKFPAQEEVTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLHN
GDEIARLGVKVGDTVIIRRAGDVIPQITQVVLERRPTDARDIVFPSACPICDSHVEKVEG
EAVARCTGGLVCPAQRKQAIKHFASRKALDIDGLGDKIVDQLVDRELIKTPADLFILKQG
HFESLERMGPKSAKNLVTALNEAKATTLAKFLYSLGIREAGEATAQNLANHFLTLESIIS
ASVESLTQVSDVGDIVASHVRGFFDEEHNLAVVNALIEQGVHWPALSAPSEDEQPLAGLT
YVLTGTLNTLNRNDAKARLQQLGAKVSGSVSAKTDALVAGEKAGSKLTKAQDLGIDVLTE
DDLIELLKKHNG
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgtctagcagcattagtgagcaaattaatcatcttcgtaccctattagagcagcacaat
tataattattatgtgcttgataccccaagcattcccgatgctgaatacgataggctatta
cgcgaactcagtgcgcttgaaacacaaaaccctgaatttttatctgctgactcaccgact
caaaaagtaggtggcgcagcgcttagcaagtttgagcaagttgctcatcaagtgccaatg
ctatcgcttgataatgcgtttagcgaagatgaatttacgggctttaatcgccgaattaaa
gagcgtttaatgagcaccgatgagcttactttttgctgtgagccaaaacttgatgggtta
gcagtgtctattatttatcgtgatggagtgttggtacaagctgcaacacggggtgatggc
tttacaggcgagaatattactcaaaatgtaaaaacaattcgtaacgtcccccttaagttg
cgtggcgactaccccaaagagcttgaagtgcgtggtgaagtatttatggacagcgctggg
tttgaaaagctaaacaatgaagcgcaaaagcgtggcgaaaaagtatttgtaaatccacgt
aatgcggcggcaggtagcctacgccagctagactctaaaattaccgcaaaacgcccactg
atgttttatgcatacagtactggtttggttgctgatggctcaattccagaggatcacttt
cagcaattagaaaagttaactgattggggcttacccctttgtccagaaacaaagctggtg
gaagggccacaagctgcactagattattatgatgatattttaacgcgtcgcagtgagctt
aaatatgaaattgacggcgtagtaataaaagttaataaaaaagccctacaagagcgttta
ggctttgtagcgcgggcacctcgttgggctattgcctataaatttccggcgcaagaggaa
gtcactcaactccttgatgtagagtttcaagttggtcgtacaggtgcaattacgcctgtt
gctcgtttagaacctgtgtttgtaggcggtgtaacggtgtctaatgcgacgcttcacaat
ggtgatgaaattgctcggttaggcgtgaaagtcggcgatacggtgattatacgccgtgct
ggtgatgtgattccgcagataacacaagttgtgcttgaacgcaggcccacagatgcaaga
gacattgtgtttccatcagcttgccctatttgtgactcccatgtagaaaaagtagaaggg
gaagctgtagcccgttgtactggtggcctagtatgccccgcgcagcgcaagcaagctata
aagcactttgcctcgcgtaaggcactagatatagatggtcttggcgataaaattgttgat
caattagtggaccgtgagcttataaaaactccggctgatttatttatattaaagcaaggt
cactttgaatcacttgagcgcatggggcctaaatcggctaaaaacttagttactgcttta
aatgaagcaaaagccactacgcttgctaaatttttatattcactcggtattcgagaagcc
ggtgaggctacggcacaaaatttagcgaatcactttttaacgctagagagtattattagt
gctagtgttgaaagcctcacacaagtaagcgatgtaggtgatattgtagcatcgcatgta
cgaggtttttttgatgaagagcacaatttagcggtggtcaatgcgcttatcgagcaaggt
gttcattggcctgcgctaagcgcaccgtcagaggatgaacaaccgttagcggggcttact
tatgtacttacaggtacgctaaatacgcttaaccgcaatgatgctaaagcgcgcttacaa
cagctaggtgcaaaggtgtcaggtagtgtatctgctaaaactgatgctttagtagcgggt
gaaaaagccggttctaaactcacaaaggctcaagatttggggatagacgtgcttacagag
gatgatttaatcgagctccttaaaaagcataacggctag
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