Stutzerimonas stutzeri DSM 4166: PSTAA_1887
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Entry
PSTAA_1887 CDS
T01976
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03030
DNA replication
psr03410
Base excision repair
psr03420
Nucleotide excision repair
psr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSTAA_1887 (ligA)
03410 Base excision repair
PSTAA_1887 (ligA)
03420 Nucleotide excision repair
PSTAA_1887 (ligA)
03430 Mismatch repair
PSTAA_1887 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psr03032
]
PSTAA_1887 (ligA)
03400 DNA repair and recombination proteins [BR:
psr03400
]
PSTAA_1887 (ligA)
Enzymes [BR:
psr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSTAA_1887 (ligA)
DNA replication proteins [BR:
psr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSTAA_1887 (ligA)
DNA repair and recombination proteins [BR:
psr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSTAA_1887 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSTAA_1887 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSTAA_1887 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSTAA_1887 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AEA83782
LinkDB
All DBs
Position
1996234..1998609
Genome browser
AA seq
791 aa
AA seq
DB search
MPSAQTAAERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPES
PTQRVGGAALAAFGQVRHEVPMLSLGNAFEEQDLLDFDRRVREGLDLPAGDLFGDGAAVE
YSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISANVRTVRNIPLKLHGSGWPAVLE
VRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGR
SDGELPNTHIGILEALKGWGLPISRELKLAKGVAECRAYYDAIGAKRDALPYEIDGVVFK
VNAVEQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVAG
VTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGVIAERRPTDARAVHVPEQCPV
CGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKI
VEQLVDKGLVRSPADLYCLTHEQVIELEGFAEISTRNLLHAIDASRKPSLARFVYALGIP
DVGEETAKLLARALGSLDRIGRALPDVLVYLPDVGLEVAHEIHSFFEDEHNRTVIALLRE
RGVEPQEEGDVHPEFAACATLPDLLDRLNIPHIARTGAQRLAERFGSLEAIIAADWLDLR
QVERLTEKAARSLRDYFDKSENAERARAIEAQLREFGMHWESERKAAEGLPLAGQTWVLT
GTLETMSRDEGKARLEALGAKVAGSVSAKTTCVVAGPGAGSKLTKANEFGVVVLDEAQFL
ERLAQLGPVNT
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcccaaaccgccgccgagcgcatcgccgaactgcgcagcgaaattgacgcc
cacaactaccgctactacgtgctcgacgaacccagcgttcccgatgccgagtacgaccgc
ctgttcaacgaactcaaggcgctcgaggcggagcacccggagctggtgacacccgagtcg
ccgacccagcgggtcggcggtgcggcgctggcggcgttcggtcaggtacgccatgaagtg
cctatgctgagcctgggtaatgccttcgaggagcaggacctgctcgatttcgaccgccgc
gtgcgcgaaggcctggatctgccagcaggcgacctgttcggagatggcgctgccgtcgaa
tacagctgcgaacccaagctcgacggtctggcggtcagtctgctctacgaaaacggccat
ctggtgcgcggcgctacccgcggcgatggcagcacgggggaggacatcagcgccaatgtg
cgcaccgttcgcaacatcccacttaagctgcatggcagcggctggccggcggtgctcgag
gtgcgcggcgaaatctacatgcccaaggccggcttcgaagcgctcaatgcgcgacagctg
gaaagcggcggcaagcccttcgccaatccccgtaatgccgcagccggcagcctgcgccag
ctggattcgaagatcaccgccagccggccgctggaactgtgcgcttacggtgttggacgc
agtgatggtgagctgccgaatacgcacatcggaattctcgaagcgctgaaaggctggggt
ctgcccatcagtcgcgaactgaagctggccaagggcgttgccgaatgccgcgcctattac
gacgccatcggtgcaaagcgcgacgcgctgccttacgaaatcgacggcgtggtgttcaag
gtcaatgccgtcgagcagcagcgcgaactgggcttccgtgcacgcgaaccgcgctgggcc
atcgcccacaagtttcccgcgcgggaagagatcaccgagctgctcgacgtggagttccag
gttggccgtactggtgccatcaccccggtcgcccggctcaagcccgtgcaggttgcaggc
gtcacggtgtccaacgcaaccctgcacaacatggacgaagttgcacgtctgggcgtgatg
atcggcgatacggtaatcgtgcgacgcgccggtgacgtcattccgcaaattctcggagtg
atcgccgagcgtcgccccaccgatgcccgcgccgtgcatgtgccagagcaatgcccggtg
tgcggttctgccgtggagcgcacccagctgatcaagcgcagcaaggggcgtgaatcggtc
agcgagggctcgatctatcgctgtgtggggcgcctggcctgtcaggcgcagctgaagcag
gcgatcattcatttcgtttcgcgccgcgccatggatatcgatgggctgggcgacaagatc
gtcgagcagttggtcgacaaggggctggtccgttctccggcggatctctactgccttacc
cacgagcaggtcattgagctggagggtttcgccgagatatccacgcgtaacctgctccac
gccatcgatgccagtcgcaaaccgagtctcgcgcggttcgtttatgcgctcggcatcccg
gacgtcggtgaggaaaccgccaaattgctggcacgcgcgctgggttccctggaccgaatc
ggccgggcactgccggacgtgctcgtctacctgcccgacgtggggctcgaagttgcccat
gaaatccacagcttcttcgaggacgaacacaaccgcacggtcatcgcgctgctgcgtgag
cgtggcgtcgagccgcaagaggagggcgacgtgcatccggaattcgcagcctgcgcgaca
ctgcccgatctgctcgaccggctcaacattcctcatatcgcccgtaccggtgcccagcga
ctggcagagcgtttcggctcgctcgaggcaatcatcgccgccgactggctcgacctgcgt
caggtagagcgtctcaccgaaaaggccgcacgctccctgcgcgactacttcgacaaatcc
gagaacgccgagcgcgcccgcgctatcgaagcccagttgcgggagttcggcatgcattgg
gaaagcgagcggaaagccgccgaaggcctgccgctagcgggccagacctgggtcctgacc
ggcacgctggaaaccatgagccgtgatgaaggcaaggcgcggctggaggcgttgggagca
aaggtcgcagggtcggtgtccgccaaaactacctgcgtggtggcaggccccggtgccggc
tcgaagctaaccaaagccaacgagttcggcgtggtggtgctcgacgaagcgcagttcctc
gagcgcctcgcacagcttggtccggtaaacacatag
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