Pseudoalteromonas sp. R3: ELR70_09265
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Entry
ELR70_09265 CDS
T10968
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psrr Pseudoalteromonas sp. R3
Pathway
psrr03030
DNA replication
psrr03410
Base excision repair
psrr03420
Nucleotide excision repair
psrr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psrr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ELR70_09265 (ligA)
03410 Base excision repair
ELR70_09265 (ligA)
03420 Nucleotide excision repair
ELR70_09265 (ligA)
03430 Mismatch repair
ELR70_09265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psrr03032
]
ELR70_09265 (ligA)
03400 DNA repair and recombination proteins [BR:
psrr03400
]
ELR70_09265 (ligA)
Enzymes [BR:
psrr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ELR70_09265 (ligA)
DNA replication proteins [BR:
psrr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ELR70_09265 (ligA)
DNA repair and recombination proteins [BR:
psrr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ELR70_09265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ELR70_09265 (ligA)
MMR (mismatch excision repair)
DNA ligase
ELR70_09265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ELR70_09265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
DNA_ligase_A_M
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AZZ97306
UniProt:
A0A3T0W1K0
LinkDB
All DBs
Position
1:983460..985481
Genome browser
AA seq
673 aa
AA seq
DB search
MSETISKQINELRQQLESYNYQYYVLDQPTVPDAEYDRVMRALIELETQHPDYLTPDSPS
QKVGGAALSKFEQVTHQVPMLSLDNAFDEAEFNAFNRRIKERLLHNDELDFCCEPKLDGL
AVSILYRDGVLVQAATRGDGQVGENITENVKTIRNIPLRLRGDDIPAELEVRGEVFMDKA
GFTRLNETAAKRDEKTFANPRNAAAGSLRQLDPKITAKRPLMFYAYSMGVVQGAELADTH
YAQLQQLKDWGLPMCPQTKKVTGASAAYQYYEAIMAERDALPYEIDGVVIKVDNKPFQAQ
LGFVARAPRWAIAFKFPAQEELTQLLDVEFQVGRTGAITPVARLEPVFVGGVTVSNATLH
NRDEIDRLGVKVGDTVIIRRAGDVIPQITQVVLEKRPEDARDITFPDVCPVCDSHVERVE
GEAVARCTGGLVCRAQRKEAIKHFASRKALDIDGLGDKIVEQLVERELITTPAELFTLRQ
GHFESLERMGPKSAKNLVGALEEAKQTTLAKFLYALGIREVGEATAQNLANHYLTLEKVM
NASIESLQEVSDVGVVVAQHIHAFFSEPHNQKVVSDLLEQGLHWPEIEAKAESEQPLAGL
TYVLTGTLSQLNRNDAKARLQALGAKVSGSVSKNTHALVAGEKAGSKLTKAQDLGIDILD
EAALIALLDSHQR
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaactatcagcaaacaaatcaatgaattaagacagcagttggaaagttataac
taccagtactatgtcttggatcagcccacggtacccgatgccgaatatgaccgggtaatg
cgcgctctgattgagctggaaacccagcatcctgactatctaaccccggattctccctca
caaaaagtcggtggtgctgcgctgagcaaatttgagcaggtaacgcatcaggtgcctatg
ttgtcactggacaatgcatttgatgaggctgagttcaatgcctttaatcgtcgcataaaa
gagcgcctgctgcacaacgacgagctggacttttgttgtgagcctaagctggatggtctc
gctgtgtctattctctaccgtgatggggtgctggttcaggccgcaacgcgaggtgatggt
caggtaggtgaaaatatcaccgaaaacgtgaaaaccatacgtaacattccgctgcgtttg
cgtggtgacgatattccggctgagctggaagtgcgtggtgaagtctttatggataaggcc
ggatttacacggctgaacgaaaccgcagcaaagcgtgatgaaaaaacctttgctaacccg
cgcaatgcagcggcgggaagcctgcgtcagctggaccctaaaataaccgctaaacgcccg
ttgatgttttatgcctattcaatgggtgtagtgcagggcgctgagctggctgatacccat
tatgcgcaattgcagcagttaaaagactggggcttgcctatgtgcccgcaaacaaaaaag
gtaacgggcgccagtgccgcttatcaatactatgaagccattatggctgagcgtgacgcg
ttgccgtatgaaattgatggcgtggtcatcaaggtcgacaataaaccgtttcaggcgcag
ctaggctttgttgcgcgtgcaccgcgctgggccattgcatttaaatttccggcacaggaa
gagttaacgcagttacttgatgtggaatttcaggtgggccgcactggcgccatcacccca
gttgcgcggctggagccggtatttgtcggcggcgtgaccgtctcgaatgcgactttgcac
aaccgtgacgaaatcgaccgtctgggtgtcaaagtgggcgataccgtgatcattcgacgc
gccggtgatgtgatcccgcagatcacccaggtggtgctggaaaagaggcctgaagatgct
cgcgatatcactttcccggatgtctgtccggtatgtgattcccacgttgagcgtgtggaa
ggtgaagctgttgcgcgttgcaccggtggtctggtgtgccgcgctcaacgtaaagaagcg
attaaacactttgcttcacgcaaggcgttggacatcgatggactgggcgacaagattgtt
gagcaactggttgagcgggaactgatcaccacgcctgctgaactgtttaccctgcgtcag
ggccattttgagtcactggagcggatgggccctaagtcggccaagaatctggttggtgcg
cttgaagaagccaagcaaacgaccctggctaagtttttatatgcccttgggatccgcgaa
gtgggtgaagccactgcacaaaacctggcaaatcactatctgacgcttgaaaaggtgatg
aatgcctccattgagagtttacaggaagtgagtgatgtgggtgttgttgttgctcagcat
attcatgcgtttttcagtgaaccacacaatcaaaaagtggtgagtgacttgctcgagcaa
ggattgcactggcctgaaattgaggcaaaagcagaaagtgaacagccactggctggcctg
acttacgtgctgacgggtacgctgagccagcttaaccgcaacgacgctaaagcgcgattg
caagctttaggtgccaaagtgtccggcagtgtctctaagaacacgcacgcactggtggcg
ggcgaaaaagcggggtctaagctaactaaggcgcaggacctggggatcgatatcctggat
gaagcggcattgattgcattgcttgactcacatcagaggtaa
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