Pseudomonas sp. SXM-1: DCC84_31605
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Entry
DCC84_31605 CDS
T11095
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pssx Pseudomonas sp. SXM-1
Pathway
pssx03030
DNA replication
pssx03410
Base excision repair
pssx03420
Nucleotide excision repair
pssx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pssx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DCC84_31605 (ligB)
03410 Base excision repair
DCC84_31605 (ligB)
03420 Nucleotide excision repair
DCC84_31605 (ligB)
03430 Mismatch repair
DCC84_31605 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pssx03032
]
DCC84_31605 (ligB)
03400 DNA repair and recombination proteins [BR:
pssx03400
]
DCC84_31605 (ligB)
Enzymes [BR:
pssx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DCC84_31605 (ligB)
DNA replication proteins [BR:
pssx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DCC84_31605 (ligB)
DNA repair and recombination proteins [BR:
pssx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DCC84_31605 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DCC84_31605 (ligB)
MMR (mismatch excision repair)
DNA ligase
DCC84_31605 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DCC84_31605 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QBQ14759
LinkDB
All DBs
Position
6684696..6686381
Genome browser
AA seq
561 aa
AA seq
DB search
MTSLMRWLFFLLLSFSPLTAWSQECPDWEADHARAQISTLAQQIRLWDDSYHRLGQSLIS
DELYDQASQRLAQWRRCFTPSAPVTDDPLGSARGTTAHPTPHTGLEKLLDDNAVQTWLET
RQDVWIQPKVDGVAVTLVYRKGRLSRVISRGDGRLGQDWSASARRIPGIVQQLPESVDLL
LQGELYWRLNDHVQAAKGGLGARGKVAGLMNRRQLSDAEAANIGLFVWAWPQGPDDFSER
LSQLAQWGFTDSGRYSHPIKDITEAAHWRSYWYSHPLPFASDGVVLHQGQRAPAERWRVS
APYWAVAWKYPVAKALAHVRKVHFKIGRTGRITSILELEPVLLDDRKISRVSVGSLKRWR
ELDIRTGDQVSISLAGHVIPRLDRVILRSQPRAELQVPQARDFHPLSCWQLAPGCEEQLL
ARLTWLSGAQGLALPHIGRETWNTLIQAGLIDGLLDWLTLDEAELANIDGFGERSSARLL
DSLRSARQRPFAQWLMALGVPPTARNNLQGGWQTLAARDTQAWLAEDGIGPGRAAQLSAF
FRDPQVLALSETLRAAGIDGF
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcacttatgcgctggctgtttttccttttactcagcttctcgccgctcactgcg
tggtcgcaggagtgccccgactgggaggccgatcacgcccgggcccagatcagcaccctg
gcgcaacaaatccgcttgtgggatgacagctaccaccggctcggccagtcattgatcagc
gatgagctgtatgaccaggccagccagcgccttgcccaatggcgcaggtgtttcactccc
tccgccccagtcacggacgacccgctgggcagcgcgcgaggcacgaccgcccacccgacg
ccccacaccggcctggaaaaactgctggacgataacgccgtgcaaacctggctggagact
cgccaggacgtgtggatccagcccaaggtcgatggcgtcgccgtcacgctggtttaccgc
aagggccggttgagccgggtcatcagtcgcggcgatggccggctgggccaggattggtca
gcctccgcccgccggattccggggatcgtgcagcaactgcccgagtccgttgacctgttg
ttgcagggcgaactctattggcgactgaatgaccatgtgcaagctgccaaaggtggcctc
ggcgcccgcggcaaagtggccgggctgatgaatcgccggcagttgagcgacgccgaggcc
gccaatatcggtctgtttgtctgggcctggccccagggccccgatgacttttccgagcgg
ctgagccagctggcgcagtggggcttcaccgacagcgggcgctacagccacccgatcaag
gacattaccgaagcggcgcactggcgcagctattggtacagccacccgctgcccttcgcc
agcgacggcgtggtattgcatcaaggccagcgggccccggccgagcgctggcgggtcagc
gcgccctactgggcggttgcctggaagtacccggtggccaaggcattggcccatgtgcgc
aaggtgcacttcaagattggccgcaccgggcgcatcacctccatcctggagttggaaccg
gtactgctcgatgaccggaagatcagccgggtcagtgtcggttcgctgaaacgctggcgg
gaactggatatccgtactggcgaccaggtctccatcagcctcgccgggcacgtcatccca
cgccttgaccgcgtcatcctgcgcagccagccacgggccgagttgcaggtcccgcaggcc
agggacttccaccccttgagttgctggcaactggccccgggttgcgaagaacagctgctc
gcgcgcctgacctggctgagcggcgcccagggcctggccctgccacacatcggccgcgaa
acctggaacaccttgatccaggccggcctgatcgacggcctgctcgattggttaaccctg
gatgaggcagagcttgctaacattgatggcttcggcgaacgcagcagtgcgcgtttactc
gacagcttgcgcagcgcccggcagcgaccgttcgcgcaatggctgatggccctgggagta
ccgcccacggcgcgcaacaatctacaaggcggctggcaaaccctggccgccagagacact
caagcctggctggccgaagacggcataggcccgggtcgcgcggcgcaactgagcgctttt
tttcgcgacccgcaggtactggccttgagtgaaacattacgggctgccgggatagatggt
ttttga
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