Pseudomonas syringae pv. tomato DC3000: PSPTO_3656
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Entry
PSPTO_3656 CDS
T00118
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pst
Pseudomonas syringae pv. tomato DC3000
Pathway
pst03030
DNA replication
pst03410
Base excision repair
pst03420
Nucleotide excision repair
pst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PSPTO_3656 (ligA)
03410 Base excision repair
PSPTO_3656 (ligA)
03420 Nucleotide excision repair
PSPTO_3656 (ligA)
03430 Mismatch repair
PSPTO_3656 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pst03032
]
PSPTO_3656 (ligA)
03400 DNA repair and recombination proteins [BR:
pst03400
]
PSPTO_3656 (ligA)
Enzymes [BR:
pst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PSPTO_3656 (ligA)
DNA replication proteins [BR:
pst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PSPTO_3656 (ligA)
DNA repair and recombination proteins [BR:
pst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PSPTO_3656 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSPTO_3656 (ligA)
MMR (mismatch excision repair)
DNA ligase
PSPTO_3656 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSPTO_3656 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Bep_C_terminal
Motif
Other DBs
NCBI-ProteinID:
AAO57125
UniProt:
Q87YY6
LinkDB
All DBs
Position
complement(4118486..4120849)
Genome browser
AA seq
787 aa
AA seq
DB search
MKAAETRILELRAELDQHNYRYHVLDEPSIPDAEYDRLFHELKALEAENPHLVTPDSPTQ
RVGSAALSAFTQVRHEMAMLSLGNAFEENDLREFDRRVTEGLDLPAGDLFGEGGKVQYSC
EPKLDGLAVSLLYRDGALVRGATRGDGTTGEDISVNVRTVRNIPLKLQGKGWPELLEVRG
EVFMSKAGFERLNASQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLEFCCYGLGQTSA
EIADTHIGVLETLKKWGMPVSRELKLADGVEECLAYYRDIGERRLSLTYEIDGVVFKVNN
LAAQRELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVMV
ANATLHNMDEVARLGLMIGDTVIIRRAGDVIPQVVQVVVERRPETAKPVEVPQSCPVCGS
HVERTQLIKRSKGKETVTEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIEGLGDKTIEQ
LVDEKLIGSPADLYKLKYEQIIDLEGFAEISSNKLLKAIADSRQPTLARFIYALGIPDVG
EETAKVLARSLASLDRVKQALPEVLTYLPDVGLEVAYEIHSFFEDEHNRNVIDALLGECG
LQLQDQGELGAEFAASTTLEGLIDKLHIPSVGPGAAQKLADRFGTLEAVISADWLDMRQT
LPEKQAKSVRDFFDDNANAERARAIEAQLKDFGMHWRSEKKTVEGLPLAGQTWVLTGSLE
RMSRDVAKEKLESLGAKVSGSVSAKTHTVVAGPGAGSKLTKANELGLTVLDEEALLKRLT
ELGVAVD
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccgccgaaacccgaatcctggaactgcgtgcagagctggatcagcacaactac
cgctatcacgttctggacgagccgagcatcccggatgccgaatacgaccgcctgttccac
gagctcaaggcccttgaggcagaaaacccgcatctggtcacgcccgattcgccgacccag
cgggtgggcagtgccgccttgtcggctttcacccaggtgcgtcacgaaatggccatgctc
agcctgggcaacgcctttgaagaaaacgacctgcgcgagttcgaccgccgtgtaaccgaa
gggctggacctgcctgccggggatctgtttggcgaaggcggcaaggtgcaatacagctgc
gagcccaagctggacggtctggcggtcagcctgctgtaccgcgacggcgcactggtacgc
ggtgccacgcgcggcgacgggaccacgggcgaagacatcagcgtcaatgtgcgcaccgtg
cgcaatatcccgctcaagctgcaaggcaagggctggccagagctgctggaagtacgcggc
gaagtgttcatgtccaaggccggtttcgagcggctcaacgccagccagctggaagttggc
ggcaagaccttcgccaacccgcgcaacgccgctgctggcagcctgcgccagctggattcg
aagatcaccgccaaccgtccgctggaattctgttgttatggcctggggcagacctcggca
gaaattgccgacacgcacatcggcgtgcttgaaacgttgaaaaaatggggtatgccggtc
agtcgcgaactgaaactggcggacggcgtcgaggaatgtctggcttactaccgcgacatc
ggtgagcgacgtctttcgctgacctacgagatcgacggtgtggtgttcaaggtcaacaac
ctggcggcgcagcgcgaactgggctttcgtgcccgcgagccacgctgggcgattgcccac
aagtttccggccatggaagagctgaccgaactgctggacgttgaatttcaggtcggccgc
accggcgcggtcacgccggtcgcgcgcctcaagccggtcaaggttgccggtgtcatggtc
gccaacgccacgttgcacaacatggatgaagtggcgcggctggggctgatgattggcgac
acggtgattatccgtcgcgccggtgacgtgattccgcaggtagtgcaggtcgtcgtcgag
cgccgccccgaaaccgccaaaccggtcgaagtcccgcaaagctgcccggtgtgcggctcg
catgtcgagcgcacgcagttgatcaaacgcagcaagggcaaggaaaccgttaccgaaggc
gcggtgtatcgctgcgtcggacggctggcctgtggtgcgcaactcaagcaggcgatcatt
cactatgtgtcgcgtcgggcaatggacatcgaaggcctgggcgacaagaccatcgagcaa
ctggtcgatgaaaagctcattggttcgcctgccgacctgtacaaactgaaatacgaacag
atcatcgacctggagggttttgctgaaatctccagcaacaagctgctcaaggcgattgcc
gacagccgacagccgaccctggcgcgcttcatctatgccctgggtattcccgatgtaggg
gaggagacggccaaggtactggcgcgctcactggcgtcgttggaccgcgtcaaacaggca
ctgccggaggtgctgacgtatctgccggatgtcggtctggaagtcgcttacgaaattcac
agcttcttcgaggatgagcacaaccgcaacgtcatcgacgcgctgctgggcgagtgcggt
ctgcaattgcaggatcagggtgagctgggtgcagagtttgccgccagcaccacgctggaa
ggcctgatcgacaagctgcacattccatcggtagggccgggtgctgcacagaaactggct
gaccggttcggcacgctggaggcggtcatcagcgctgactggctggacatgcgccagacg
ctgccggagaaacaggccaaatcggtccgcgacttcttcgacgacaacgccaacgccgaa
cgcgcccgcgccatcgaagcccagctcaaggacttcggcatgcattggcgcagcgagaaa
aaaaccgtcgaaggcttgccgctggcaggccagacctgggtgctgaccggttcgctggaa
cgcatgagtcgcgacgtggccaaggaaaaactcgaaagcctgggggccaaggtgtccggc
tcggtatcggccaagacccacaccgtggtcgccgggccaggtgcgggttccaaactgacc
aaagccaatgagctgggcctgaccgtgctggacgaagaggcactgctcaagcgcctgacc
gaactgggcgtagcggttgattga
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