Phreatobacter stygius: E8M01_17400
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Entry
E8M01_17400 CDS
T05955
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pstg
Phreatobacter stygius
Pathway
pstg03030
DNA replication
pstg03410
Base excision repair
pstg03420
Nucleotide excision repair
pstg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pstg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E8M01_17400 (ligA)
03410 Base excision repair
E8M01_17400 (ligA)
03420 Nucleotide excision repair
E8M01_17400 (ligA)
03430 Mismatch repair
E8M01_17400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pstg03032
]
E8M01_17400 (ligA)
03400 DNA repair and recombination proteins [BR:
pstg03400
]
E8M01_17400 (ligA)
Enzymes [BR:
pstg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E8M01_17400 (ligA)
DNA replication proteins [BR:
pstg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E8M01_17400 (ligA)
DNA repair and recombination proteins [BR:
pstg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E8M01_17400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E8M01_17400 (ligA)
MMR (mismatch excision repair)
DNA ligase
E8M01_17400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E8M01_17400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HALZ
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QCI65831
UniProt:
A0A4D7AZP5
LinkDB
All DBs
Position
3689456..3691876
Genome browser
AA seq
806 aa
AA seq
DB search
MSAKNMKPIDAFEPAEAAAEHAALGERIAEADRLYFQDDAPDLSDADYDALRRRYEALEN
RFPELKTDDSLTRKVGTAPSSKFAKVRHAVPMLSLSNAFADDEVFDFVGRVRRFLGLAAD
APVAMTAEPKIDGLSCSLRYENGLLSVAATRGDGAVGEDVTANVRTIEGLPQALTGAPEV
LEVRGEVYLSHEDFRAINARQEERGLAPFANPRNAAAGSLRQLDAKITASRPLRFFAYTW
GEITPPLPRDSQSGMVDWFKDLGFPVNPLTVVCRSAEDLLAHYRMIEAKRASLGYDIDGV
VYKVDSLALQERLGFVSRSPRWAIAHKFAAEKATTVLEGIDIQVGRTGALTPVAKLRPVT
VGGVVVSNATLHNEDYIKAIGSDGSPIRDGVDIRIGDTVTIQRAGDVIPQIIDVVLEQRP
KTAVPYSFPQICPACGSHAARDEGESVRRCTGGLICPAQSVERLRHFVSRLAFDIEGFGD
IYIQTLFQAGLIKAPADLFTLKFDEVKEAIERRRIQVSNERYAALGKEPPRRQAAKKADQ
DEDKAIKNLLGAIEARRSITLSRFIFGLGIRHIGETTAKALARRFPDIKTLLPAIDAAAK
GRPGEAWFQLSGFPGIGPVTLERVVEAAAHEAADRSELDRATILGRLGKAQRAALIERYG
DEDAVMAALKAAAAQRPTEAYGLLAADGEMGTVATNSLIEFFEEDHNAKAVAALLEQVTI
EAAEAVSKETPVAGKTVVFTGSLELMTRDEAKARAERLGAKVSGSVSSKTDFVIAGPGAG
SKLKDAEKLGVKVLSEDEWLQLIQGA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcgaaaaatatgaagcccatcgacgccttcgagcccgccgaggccgccgccgaa
catgccgcgctcggcgaacggatcgccgaggccgaccggctctatttccaggatgatgcg
ccggatctcagcgacgccgattacgacgcgctgcgccgccgctacgaggccctggaaaac
cggtttcccgagctgaagaccgatgacagcctgacccgcaaggtcggtacggcgccgtcg
tcgaaattcgccaaggtgcgccatgccgtacccatgttgtcgctgtcgaacgctttcgcc
gatgacgaggtgttcgatttcgtcggacgggtcaggcgcttcctcggccttgccgcggac
gcgccggtggccatgaccgccgaaccgaagatcgacggcctgtcctgctcgctgcgctat
gagaacggccttttgagtgtcgccgcgacccgtggcgacggcgccgtcggcgaggatgtc
accgccaatgtccgcaccatagagggcctgccccaggcgctgacaggcgcacccgaggtg
ctggaggtgcgcggcgaggtctatctcagccacgaggacttccgcgccatcaacgcccgc
caggaagagcgcgggctggcgcccttcgccaatccgcgcaatgcggcggcgggatcgctg
cgccagctcgacgccaagatcaccgcctcgcggccgctgcgcttctttgcctatacctgg
ggcgagatcaccccgcctttgccgcgcgacagccagtccggcatggtcgactggttcaag
gacctcggttttccggtcaatccgctgaccgtggtctgccggagcgccgaggatctcctg
gctcattaccggatgatcgaggcgaagcgcgcgagcctcggttatgacattgacggtgtc
gtctacaaggtcgacagcctcgccttgcaggagcgcctcggtttcgtgtcgcgctcgccg
cgctgggcgatcgcgcataaattcgccgccgagaaggcgacgacggtcctggaaggcatc
gacattcaggtcggccgcaccggggctctgacgccggtcgccaagctgcggccggtgacg
gttggtggcgtggtggtgtccaacgcgacgctgcacaacgaggactacatcaaggcgatc
ggcagcgacggcagcccgatccgcgacggcgtcgacatccggattggcgacacggtgacc
atccagcgcgccggcgatgtcattccgcagatcatcgacgtcgtgctggagcagcggccc
aagacggcggtgccctattcgtttccgcagatttgccccgcctgcggcagccacgcggcg
cgcgacgagggtgaatcggtccgccgctgcaccggcggcctgatctgcccggcccagagc
gtcgagcggctcaggcacttcgtgtcgcgcctggccttcgacatcgaaggctttggcgac
atctatattcagacgctgttccaggccggtctgatcaaggcgccggcggacctgttcacg
ctcaagttcgacgaggtgaaggaggctatcgagcggcgccggatccaggtgagcaatgag
cgttatgccgcgctcggcaaggaaccgcccaggcgccaggccgccaagaaggccgatcag
gacgaggacaaggcgatcaagaacctgctcggcgccatcgaggcgcggcggtcgatcacg
ctcagccggttcattttcggtcttggcatccgtcatatcggcgaaaccacggccaaggcc
ctggcccggcgtttccctgacatcaagaccctgctgccggcgatcgatgcggccgccaag
gggcggcccggcgaagcctggttccagctgtcgggctttcccggcatcggtccggtgacg
ctggagcgcgtcgtcgaggccgcggcgcacgaggccgcggaccgctccgagctggaccgg
gcgacgatattggggcgcctgggcaaggcccagcgggcggccctgatcgagcgctatggc
gacgaggacgccgtgatggcggcgctgaaggctgcggctgcgcaacggccgaccgaggcc
tatgggctgctggccgccgacggcgagatgggcacggtggcgaccaattcgctcatcgag
ttcttcgaagaagaccacaatgccaaggcggtcgccgccttgctggagcaggtgacgatc
gaggcggccgaggccgtgtcgaaggaaacgccggtcgccggaaagacggtggtcttcacc
ggatcgctggagctgatgacacgcgacgaggccaaggccagggccgagcggctgggtgcc
aaggtctcgggctcggtctcgtcgaagaccgattttgtcattgccggcccgggcgccggt
tcgaagctcaaggatgccgaaaagctcggcgtgaaggtgctctccgaagacgagtggttg
cagctcattcaaggcgcctga
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integrated database retrieval system
