Peredibacter starrii: SOO65_19950
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Entry
SOO65_19950 CDS
T09598
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
psti
Peredibacter starrii
Brite
KEGG Orthology (KO) [BR:
psti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psti03009
]
SOO65_19950 (rlmD)
Enzymes [BR:
psti01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
SOO65_19950 (rlmD)
Ribosome biogenesis [BR:
psti03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SOO65_19950 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_ANTKMT
Cons_hypoth95
DUF8236
MethyltransfD12
Methyltransf_32
Methyltransf_11
Methyltransf_4
TehB
Motif
Other DBs
NCBI-ProteinID:
WPU64972
UniProt:
A0AAX4HNY0
LinkDB
All DBs
Position
3988545..3989687
Genome browser
AA seq
380 aa
AA seq
DB search
MKNICGYFQQGICRSCDLMEVDYRDQLQMKEKLLSESLNDFSVSLLPSVASQEFSFRNKA
KFVVTGTMENPVIGLWGEKNLDSGRELLNCPLHLDEINQALPAIKKFITEAKLVPYNIEA
KKGELKGIILFYSPSSKESYLRFIMRSKEAVTRITKHHHALLNDLPHLKSLSVNIQPVPH
ALLEGDEEVFITQTSSVNHRLGTVDMKLGPRAFVQTNQAVAEKLYATAADWVKESGSKKF
LELFCGQGAFSFFAAKNIEEGLGIEINADAVQQANLTAEKQNLPHLKFKSADAGKVASEL
MKFNPEVMLVNPPRRGLADATDLIINQRPNHLIYSSCNYETLAQDLKKLSPHYSVKRVQL
FDMFPQTRHFETLVLLELKA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatatttgtggttactttcaacaaggcatttgtcgttcatgtgatctcatggaa
gtggattaccgtgatcagcttcagatgaaagagaaactgttgtcagaatcactcaatgat
ttttcagtctcgcttcttccttcagtcgcttctcaggaattctcttttagaaataaagcg
aagtttgtcgtaactggcaccatggaaaatcctgtgattggactatggggcgagaaaaat
ctggattcaggcagagaacttctaaattgccctctccacttggatgagattaatcaagct
ctcccggcgattaagaaattcatcactgaagcaaagttagtaccttataacattgaagcg
aaaaaaggtgagctcaaaggaatcattcttttttactctccttccagcaaagaatcatat
cttcgcttcatcatgcgctcgaaagaggccgtcactcgtattaccaaacaccatcatgct
ctattaaatgatttgcctcacttgaagtccctttcagtgaatattcaaccagtacctcac
gcactactcgaaggtgatgaggaagttttcatcactcaaacttcttcagtgaatcatcgc
ttaggcacggttgatatgaaactcgggccacgtgcttttgttcagaccaatcaagcagtt
gcggaaaaactttatgcaaccgccgctgattgggtgaaggaatcaggctcaaaaaagttc
ttagaactcttctgtggacaaggagctttcagtttctttgccgccaaaaatatcgaagag
ggccttggtattgaaatcaatgcagatgctgttcaacaggcaaatctcactgccgaaaaa
caaaatcttcctcacctcaaattcaaaagcgcggatgcgggaaaagtcgccagtgaactg
atgaagtttaatccggaagtaatgcttgttaatcctcctcgaagaggactcgcggatgcc
actgacttgatcatcaatcaacgaccaaatcatcttatctattctagctgtaattatgaa
acgcttgcgcaggatcttaagaagctctccccccactattctgtgaagagagttcaattg
tttgatatgttcccgcagaccagacattttgaaacgctggtgctgctggaacttaaagct
taa
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