Puccinia striiformis f. sp. tritici (wheat yellow rust fungus): Pst134EA_003158
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Entry
Pst134EA_003158 CDS
T09520
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pstr
Puccinia striiformis f. sp. tritici (wheat yellow rust fungus)
Pathway
pstr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pstr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pst134EA_003158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pstr03400
]
Pst134EA_003158
Enzymes [BR:
pstr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pst134EA_003158
DNA repair and recombination proteins [BR:
pstr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
Pst134EA_003158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
72022622
NCBI-ProteinID:
XP_047812003
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All DBs
Position
2:3827025..3830361
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AA seq
593 aa
AA seq
DB search
MEIKIKSEDGGENEFKTVSVTQERDNQDPLRAIGPSPPFHDFCKVLNLIAAKKKTKACSL
PANRRKCLLNLFDDWRKKYGNDLYPCIRLLLPAEDRERPTYFLKEFRLARLYCIALGLDR
KTSSTAKRLLNWRSDATDTNQVDKESTAGDFAKLLFREISSRSLVNKTIFSIDDINKHLD
SLAAADTEAKRLEIIKIWLNEVAPADHLWLIKIVLQDIGLGLKENFVLKCFHHNAIELYN
VCTDLKIICHTLYSPDVPLEDRAVTLKSFNVFKPMLAKRSAKDLPDIVKLMTSGRHKEFL
IEEKMDGERIQIHKSGEQYQYWSRNGKNYTDLYGANPATGRLTPYIHSAFKPSVDEVILD
GEMLAWDPVKEKIMAFGTVKSLTSSNNREQPRALFKVFDILYLRGKGKPQGGEGLIIKRL
GSTYQLNGRSDDWYKVKPEYMDELGETFEVLAVGGYWGRGKRGGTFGSFLVAMIDNENSD
PSQGIFRYRTLCGVGTGLNLNETKQIMTKLEGKYTEWDKKRTERNPDWLDLGPGSGMTPD
VWWHWKDSFLLTIKGAEIIPSSAYGCRCSIRFPRSIRFDIERDIQECMSYEGD
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggaaattaagatcaagtctgaagatggtggcgagaatgaattcaagacagtttcagtg
acacaagaacgtgataatcaagatcccctgcgagccattggtccctcgccgccattccac
gatttctgcaaggtgctcaacctcatagccgctaagaaaaaaacaaaagcatgctctctt
ccagcgaatcgtcgcaagtgtttgttgaaccttttcgacgactggcgcaagaaatacggc
aacgacttatatccttgcatccgactgcttctaccagccgaagatagagagcgaccaacg
tactttctgaaggaattccgattagcacgattgtactgcattgcactaggcttagacagg
aaaacttcctcgactgctaagaggttactaaattggaggagcgacgcgactgatactaat
caggtcgacaaagagtcaacggccggtgacttcgcgaaattactgttccgagaaatctct
agtcgatccctagtcaacaaaaccatcttctccatcgacgatatcaataaacatctagat
tcactggccgcagcggatacagaggccaagagacttgaaataattaagatttggctcaac
gaggttgctcctgcggatcacctgtggttgatcaagatcgttctacaagacatcggatta
ggactgaaagaaaattttgttttgaaatgtttccatcataatgcaatcgaattatataac
gtctgtacggacctcaagattatttgccataccctttattctccagatgtcccactggag
gacagagcagtcacgttgaaaagcttcaatgtcttcaaaccgatgcttgcaaaaaggagc
gccaaagatctaccggatatcgttaagttaatgacatcaggcagacataaggagtttttg
atcgaagaaaagatggatggtgaacggatacaaatccataaatctggggaacaatatcaa
tattggtcaaggaatggtaaaaattacacggatctttatggtgccaatccagcgactggt
cgtctgaccccatatattcacagcgctttcaaaccatcagtcgacgaagttatactagac
ggagaaatgctggcatgggatccggtgaaggaaaaaataatggcgttcgggactgtgaaa
tcattaacttcttccaataaccgtgaacagccacgggcactgttcaaggtgtttgatatt
ttgtatctcagaggcaaaggaaaacctcaagggggtgaaggattaatcatcaagagactt
ggttctacatatcagctcaacggtcgatcagatgactggtataaggtcaagccagaatat
atggatgagttgggagaaacttttgaagtcttggcagttggtggatactggggacgagga
aaaaggggcggaacatttggcagttttctcgtagccatgattgacaatgagaactctgat
ccatcgcaaggcatattccgctatagaaccttatgtggcgtagggacgggactaaatctg
aatgaaacgaagcaaatcatgacaaaactagagggaaagtatactgaatgggataagaaa
cggacagagcgcaaccccgactggttggacttggggccaggctcgggaatgacacctgat
gtgtggtggcactggaaagattcatttttacttacgatcaaaggtgcagaaattatccct
tccagtgcctatggatgccgatgttctatccgatttcctagatccattcgcttcgacatt
gagagagatatccaagagtgtatgtcttacgaaggtgattaa
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