Stutzerimonas decontaminans: UIB01_12725
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Entry
UIB01_12725 CDS
T03366
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
pstu
Stutzerimonas decontaminans
Pathway
pstu03030
DNA replication
pstu03410
Base excision repair
pstu03420
Nucleotide excision repair
pstu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pstu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
UIB01_12725
03410 Base excision repair
UIB01_12725
03420 Nucleotide excision repair
UIB01_12725
03430 Mismatch repair
UIB01_12725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pstu03032
]
UIB01_12725
03400 DNA repair and recombination proteins [BR:
pstu03400
]
UIB01_12725
Enzymes [BR:
pstu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
UIB01_12725
DNA replication proteins [BR:
pstu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
UIB01_12725
DNA repair and recombination proteins [BR:
pstu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
UIB01_12725
NER (nucleotide excision repair)
GGR (global genome repair) factors
UIB01_12725
MMR (mismatch excision repair)
DNA ligase
UIB01_12725
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
UIB01_12725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
BRCT
DNA_ligase_ZBD
PTCB-BRCT
DUF4796_N
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
AHY43295
UniProt:
A0A023WU94
LinkDB
All DBs
Position
complement(2723280..2725655)
Genome browser
AA seq
791 aa
AA seq
DB search
MPSAQTATERIAELRSEIDAHNYRYYVLDEPSVPDAEYDRLFNELKALEAEHPELVTPES
PTQRVGGAALAAFGQVRHEVPMLSLGNAFVEKDLLDFDRRVREGLDLPAGDLFGDGAMVE
YSCEPKLDGLAVSLLYENGHLVRGATRGDGSTGEDISTNVRTVRNIPLKLHGNGWPAVLE
VRGEIYMPKAGFEALNARQLESGGKPFANPRNAAAGSLRQLDSKITASRPLELCAYGVGR
SDGALPATHIGILEALKSWGLPISRELKLAKGIAECRAYYDVIGEKRDALPYEIDGVVFK
VNAVAQQRELGFRAREPRWAIAHKFPAREEITELLDVEFQVGRTGAITPVARLKPVQVAG
VTVSNATLHNMDEVARLGVMIGDTVIVRRAGDVIPQILGVIAERRPADARVVHVPEQCPV
CGSAVERTQLIKRSKGRESVSEGSIYRCVGRLACQAQLKQAIIHFVSRRAMDIDGLGDKI
VEQLVDKGLVSSPADLYCLTHEQVIELEGFAEISTRNLLNAIDASRQPSLARFVYALGIP
DVGEETAKLLARALGSLDRISRALPDVLVYLPDVGLEVAHEIHSFFDDEHNRSVIALLRE
RGVEPQEEGDVHPEFAACATLADLLDRLNIPHIARTGAQRLAERFGSLDAIIVADWLDLR
QVERLTEKAARSLRDHFDKPENAERARLIEAQLREFGMHWESERKAAEGLPLAGQTWVLT
GTLETMSRDEGKERLEALGAKVAGSVSAKTACVVAGPGAGSKLSKATELGVTVLDEAQFL
KRLAQLGSANT
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atgccttccgcccaaaccgccaccgagcgcattgccgaactgcgcagcgaaatcgacgcc
cacaactaccgctactacgtactcgacgagcccagtgttcccgatgccgagtacgaccgc
ctgttcaacgaactcaaggcgctggaggcggagcacccggaactggtgacgcccgagtcg
ccaacccagcgggtcggcggggctgcgctcgcggcattcggtcaggttcgccacgaagtg
ccgatgctgagtctgggcaacgccttcgtggaaaaggatctgctcgattttgatcgtcgc
gtgcgtgaaggcctggatctgccggcaggcgacctattcggcgatggcgccatggtcgaa
tatagctgcgaacccaagctggatggcctggcggtcagcctgctctatgagaacggccat
ctggtccgtggtgccacccgcggtgatggcagcacgggtgaggacatcagcaccaacgtg
cgtaccgtgcggaacattccgttgaagctgcatggtaacggctggcccgcggtgctcgaa
gtccgcggcgagatttacatgcccaaggcgggtttcgaggcgcttaacgcccgtcagctg
gaaagcggcggcaagcccttcgccaatccacgtaacgccgcagccggcagcctgcgccag
ctggattcgaaaatcaccgccagccggccgctggaactgtgcgcctacggcgttgggcgc
agcgatggcgcgcttccggctacgcacatcgggattctcgaagcgctgaaaagctggggc
ctgcccataagccgtgagctgaaactggccaagggcattgctgaatgccgcgcctattac
gacgtcatcggcgaaaagcgcgacgcgctgccgtatgaaatcgacggcgtggtgttcaag
gtcaacgccgtggcgcagcagcgcgagctgggctttcgcgcccgcgagccgcgttgggcc
attgcccacaagtttcccgcgcgggaggaaatcaccgaactgctagacgtcgagttccag
gtcggtcgcactggcgcgatcacccctgtcgcacggttgaaaccggtgcaggtagccggc
gtcacggtatccaacgcaacgctacacaacatggacgaagtggcgcgccttggcgtgatg
atcggcgatacggtgatcgtgcgccgcgccggcgacgtgattccccagattctcggcgta
atcgccgaacgccgcccagctgacgcgcgtgtcgtgcatgtgcctgagcagtgcccggtc
tgcggctcggcggtggagcgcacccagctgatcaagcgcagcaaggggcgcgagtcggtg
agcgagggctcgatctaccgttgcgttggccgtctggcctgccaggctcaactcaaacag
gcgatcatccacttcgtctcgcgtcgcgcgatggatatcgatggcctgggcgacaagatc
gtcgagcagctggtcgacaagggattggtcagctcgccggcggatctctactgcctgact
cacgagcaggtcattgaactggaaggtttcgccgagatatccacgcgtaacctgcttaat
gccatcgacgccagccgccaaccaagccttgcgcggtttgtctacgcgttgggcatacca
gatgttggcgaggaaaccgccaagctactggcacgggcattgggctccttggatcgcata
agtcgcgcgctgcctgatgtgcttgtttacctgcccgatgtggggctcgaggttgcgcac
gagatccacagcttcttcgatgacgaacataaccgtagcgtgatcgccctgttgcgtgaa
cgtggcgtcgaaccgcaggaggagggcgacgtccatcccgagttcgccgcgtgcgcgacg
ctggccgatctgctcgacaggctcaacatcccccatatcgcccgcaccggcgcccagcgc
ctggcagagcgtttcggcagtctcgacgcgatcatcgtggctgattggctcgatctgcgt
caggtcgaacgcctcaccgaaaaggctgctcgttcgctgcgcgaccacttcgacaaaccc
gaaaacgccgagcgcgcccgtttgattgaagcgcagttgcgcgagttcggaatgcactgg
gaaagcgaaaggaaagccgccgaaggcctgccgctggccggccagacctgggtgctgacc
ggcacgctggaaaccatgagccgtgatgaaggcaaggagcgactggaggcgttgggcgca
aaggttgcaggttcagtgtccgccaaaacggcttgcgtggtagcgggccctggcgccggc
tcgaagctctccaaagccactgagctcggtgtgacggtgctcgacgaagcgcagttcctc
aagcgccttgctcagcttggttcggcaaacacataa
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