Phytohabitans suffuscus: Psuf_047720
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Entry
Psuf_047720 CDS
T06545
Symbol
ligA
Name
(GenBank) DNA ligase A
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psuu
Phytohabitans suffuscus
Pathway
psuu03030
DNA replication
psuu03410
Base excision repair
psuu03420
Nucleotide excision repair
psuu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Psuf_047720 (ligA)
03410 Base excision repair
Psuf_047720 (ligA)
03420 Nucleotide excision repair
Psuf_047720 (ligA)
03430 Mismatch repair
Psuf_047720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psuu03032
]
Psuf_047720 (ligA)
03400 DNA repair and recombination proteins [BR:
psuu03400
]
Psuf_047720 (ligA)
Enzymes [BR:
psuu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Psuf_047720 (ligA)
DNA replication proteins [BR:
psuu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Psuf_047720 (ligA)
DNA repair and recombination proteins [BR:
psuu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Psuf_047720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Psuf_047720 (ligA)
MMR (mismatch excision repair)
DNA ligase
Psuf_047720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Psuf_047720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCB87459
UniProt:
A0A6F8YN50
LinkDB
All DBs
Position
5122451..5124277
Genome browser
AA seq
608 aa
AA seq
DB search
MMSLDNAFDDEELSAWAERVERDAGGPVTYLCELKVDGLAINLTYEKGRLVRAATRGDGR
TGEDVTPNVRTIRDVPERLAGDGVPDLVEVRGEVYFPVSAFGDLNASLVEQGKAPFANPR
NAAAGSLRQKDPRITASRGLRMVVHGIGARRGFQPPAQSAAYEVMKGWGLPVSERWQVKS
GMDGVREYIGYYREHRHDVEHEIDGVVVKVDPVSIQGRLGSTSRAPRWAIAFKYPPEEVN
TKLLDIRVNVGRTGRVTPFAVLEPVRVAGSTVALATLHNAREVERKGVLIGDTVVIRKAG
DVIPEVLGPVMELRPAGARAFEMPELCPECHSPLAPAKEGDIDIRCPNNRSCPAQLRERV
FHLAGRGALDIEVLGYKAAVALLESGVIHDEGDLFALTADDLRRSEFFVNKDGSLGSNAV
KLLENLAEARERPLWRVLVALSIRHVGPTAAQALARHFRSMEAIEKASLEELTGVEGVGP
TITESLHEWFTVDWHREVVEKWRRDGVRMVEEQVDEGPRPLEGITVVVTGTLSTYSRDKA
TEEITVRGGKVSGSVSKKTGFVVVGDNPGSKYDKALSLKVPVLDEAGFDVLLEQGADAAR
EVAQSASE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcgctcgacaacgcgttcgacgacgaggagctgtcggcctgggccgagcgggtc
gagcgggacgcgggcgggccggtgacctacctgtgcgagctcaaggtcgacggcctggcg
atcaacctcacgtacgagaagggccgcctcgtgcgcgccgccacccggggcgacgggcgc
accggcgaagacgtgacgcccaacgtgcgtaccatccgcgacgtgcccgagcgcctggcc
ggcgacggcgtgcccgacctggtcgaggtgcgcggcgaggtctacttcccggtctccgcg
ttcggcgacctcaacgcgagcctcgtggagcagggcaaggcgccgttcgccaacccgcgc
aacgccgccgccggcagcctgcgccagaaggatccccggatcaccgcgtcccgcggcctg
cgcatggtggtgcacggcatcggcgcgcggcgcgggttccagccgcccgcgcagagcgcc
gcgtacgaggtgatgaagggctgggggctgccggtcagcgagcggtggcaggtcaagtcc
ggcatggacggcgtccgcgagtacatcgggtactaccgcgagcaccgccacgacgtcgag
cacgagatcgacggggtggtggtcaaggtcgacccggtcagcatccagggccggctcggc
tcgaccagccgggcgccccgctgggcgatcgcgttcaagtacccgcccgaggaggtcaac
accaagctgctcgacatccgcgtcaacgtggggcgcaccgggcgggtcacgccgttcgcg
gtgctggagccggtgcgggtcgccggctcgacggtcgcgctggccaccctccacaacgcg
cgcgaggtcgagcgcaagggcgtgctgatcggcgacaccgtcgtgatccgcaaggccggc
gacgtgatccccgaggtgctcgggccggtgatggagctgcggccggccggcgcgcgggcg
ttcgagatgccggagctttgcccggagtgccactcgccgctggccccggccaaagagggc
gacatcgacatccgctgccccaacaaccgctcctgcccggcgcagctgcgcgagcgggtg
ttccacctggccgggcggggcgcgctcgacatcgaggtgctgggctacaaggcggcggtg
gcgctgctggagtcgggcgtcatccacgacgagggcgacctcttcgcgctgaccgccgac
gacctgcggcgctcggagttcttcgtcaacaaggacggctcgctcggcagcaacgcggtc
aagctgctggagaacctcgccgaggccagggaacggccgctgtggcgggtgctcgtcgcg
ctctccatccggcacgtcggacccaccgccgcgcaggcgcttgcccggcacttccgctcg
atggaggcgatcgaaaaggcgtccctggaggagctgaccggggtcgagggcgtggggccg
acgatcaccgagagcctccacgagtggttcaccgtcgactggcaccgcgaggtggtcgaa
aagtggcggcgggacggcgtgcggatggtcgaggagcaggtcgacgagggcccgcgcccg
ctggaggggatcacggtcgtggtcaccggcacgctttcgacgtactcgcgcgacaaggcc
accgaagagatcaccgttcggggcggcaaggtgagcggttcggtttccaagaagaccggt
ttcgtggtggtcggcgacaatcctgggtcaaagtacgacaaggccctatccctaaaagtg
ccggtgctcgatgaagccggtttcgacgtgctgctggagcagggcgcggacgccgcgcga
gaggtggcgcagagcgcgtccgaataa
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