Pseudomonas sp. VLB120: PVLB_16700
Help
Entry
PVLB_16700 CDS
T02897
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03030
DNA replication
psv03410
Base excision repair
psv03420
Nucleotide excision repair
psv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVLB_16700 (ligA)
03410 Base excision repair
PVLB_16700 (ligA)
03420 Nucleotide excision repair
PVLB_16700 (ligA)
03430 Mismatch repair
PVLB_16700 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psv03032
]
PVLB_16700 (ligA)
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_16700 (ligA)
Enzymes [BR:
psv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PVLB_16700 (ligA)
DNA replication proteins [BR:
psv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PVLB_16700 (ligA)
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PVLB_16700 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PVLB_16700 (ligA)
MMR (mismatch excision repair)
DNA ligase
PVLB_16700 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PVLB_16700 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AGZ36123
UniProt:
A0AAN0R450
LinkDB
All DBs
Position
complement(3689795..3692125)
Genome browser
AA seq
776 aa
AA seq
DB search
MTAETRILELRAELDQHNYRYYVLDEPSIPDAEYDRLFNELKALEAEYPHLVTPDSPTQR
VGGHALAAFSQVRHEVPMLSLGNAFDEADLREFGRRVAEGLDQSGAVDFSCEPKLDGLAV
SLLYRDGQLVQGATRGDGTTGEDISANVRTVRNIPLKLQGQGWPAVLEVRGEVYMSKAGF
DRLNAVQAAAGGKTFANPRNAAAGSLRQLDPKITASRPLEFCSYGVGQVSESIGESHIGI
LEQLKQWGLPISRELKHAAGIEECLAYYHDIGERRSSLAYEIDGVVFKVNSLAAQRELGF
RAREPRWAVAHKFPAMEELTEVLDVEFQVGRTGAVTPVARLKPVKVAGVTVSNATLHNMD
EIARLGLRIGDTVIIRRAGDVIPQVMQVVLERRPEDARPVEVPSECPVCGSQVERTQLVK
RSKGKETTSEGAVYRCVGRLACGAQLKQAIIHYVSRRAMDIDGLGEKSVEQLVDEGLIGS
PADLYKLAFEQIVGLEGFAEVSSKKLLDAIEASKRPSLARFIYALGIPDVGEETAKVLAR
SLGSLARVQKALPQVLTYLPDIGLEVAYEIHNFFEDDHNRKVIEQLFASGMQLQDEGEVA
AEFAASTTLAGMIAKLDIASVGPTGAEKLVAKLDSLDKIIEADGIDLRQVLNTKQADAVR
EFFRDEANQKLARALEAQLLEFGMHWSNEKKVAEGLPLAGQTWVLTGTLERMSRDIAKEK
LESLGAKVAGSVSGKTHCVVAGPGAGSKLAKASELGVRVLDEDAFVAFLADQGIAI
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgaaacccgaattctcgaactgcgagccgagctcgatcagcacaactaccgc
tattacgtgctcgacgagccaagcatcccagatgccgagtacgaccgcctgttcaacgaa
ctcaaggcgctggaggccgaatacccgcacctggtgacgcccgactcgccgacccagcgt
gtcggtggtcatgccttggcggcattcagccaggtccgtcacgaagtgccgatgctcagc
ctcggcaacgccttcgacgaggccgatctgcgcgagttcggccggcgcgtggccgaaggg
ctcgatcagtccggtgcggtcgatttcagttgcgagcccaagctcgatggccttgcggtc
agcctgttgtaccgtgatggccagttggtgcaaggcgcgacccgaggtgatggcaccacc
ggcgaggacatcagcgccaacgtgcgcaccgtgcggaatatcccgctcaagctccagggc
caggggtggcctgccgtgcttgaagtgcgcggtgaggtgtacatgagcaaggccgggttc
gaccggctcaacgctgtccaggccgctgctggcggcaagaccttcgccaacccacgcaac
gcggcggccggcagcctgcgtcagttggacccgaagatcactgccagtcgcccgctggaa
ttctgcagctatggcgtggggcaggtctccgagagcatcggcgaaagccacattggtatc
ctcgaacaactcaagcaatggggcctgccgatcagccgcgaactcaagcacgcggcgggc
atcgaagagtgcctggcctattaccacgacatcggtgagcggcgtagcagcctggcctac
gaaatcgacggcgtggtgttcaaggtcaacagtctggccgcgcagcgcgagctgggcttc
cgcgcccgagagccgcgctgggccgtggcccacaagttccccgccatggaagagctgacc
gaagtgctggatgtcgagttccaggtcggtcgtaccggagcggtcactcccgtggcacgc
ctgaagccggtcaaggtcgccggcgtgaccgtgtcaaacgccaccctgcacaacatggat
gaaattgcgcgcttggggctgcgtatcggtgacacggtgatcattcgccgcgccggtgac
gttatcccgcaggtgatgcaggtggtgctcgagcgtcgtcccgaagatgcccgtccggtg
gaggtgcctagcgaatgtccggtgtgcggctcgcaggtcgagcgcacccagttggtcaag
cgcagcaagggcaaggaaaccaccagcgagggcgcggtgtatcgctgtgtcggtcgcctg
gcctgcggtgcccagctcaagcaagcgatcattcactacgtgtcccgtcgcgccatggac
atcgacggcctgggtgaaaagagcgtcgagcagttggtggatgaggggctgatcggctcg
ccggcggacctgtacaagctggcgttcgagcagatcgttggtctggaaggtttcgctgag
gtctccagcaagaagctgctggacgccatcgaggccagcaagcgcccgagccttgcacgc
ttcatctatgccttgggcattccggatgtgggcgaggagaccgccaaggtcctggctcgc
tcgctgggcagcctggcgcgggttcagaaggcgctgccgcaggtgctgacctacctgccg
gacatcgggctcgaagtggcctatgagattcataacttctttgaagacgaccacaaccgc
aaggtcatcgagcaactgttcgccagcggcatgcagttgcaggacgagggcgaggtggca
gcggagttcgcggccagcaccaccttggccggcatgatcgccaagctcgatatcgcctcg
gtcggcccgacgggggcggaaaagctggtggccaagctcgacagcctggacaagatcatc
gaagccgacggcatcgacttgcgccaggtcttgaacaccaagcaggccgatgcggtgcgc
gaattcttccgcgacgaggccaaccagaagcttgcacgggctctcgaggctcagttgctg
gagttcggcatgcactggagcaatgagaaaaaagttgccgaagggctgccgctggccggt
cagacctgggtgctgaccgggaccctggagcgcatgagtcgcgacatcgccaaggaaaaa
ctcgaaagcctgggcgccaaggtagccggctcggtgtccggcaagacccattgcgtggtt
gccggtcccggtgccggttccaagctggccaaggccagtgagctgggggtgagggtgctg
gatgaggatgcatttgttgcgttcttggccgatcagggtattgctatctag
DBGET
integrated database retrieval system
