Pseudoliparis swirei (Mariana hadal snailfish): 130189088
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Entry
130189088 CDS
T09868
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130189088 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pswi03041
]
130189088 (eftud2)
Spliceosome [BR:
pswi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130189088 (eftud2)
Complex C
U5 SnRNP specific factors
130189088 (eftud2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Ras
Motif
Other DBs
NCBI-GeneID:
130189088
NCBI-ProteinID:
XP_056263722
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All DBs
Position
23:complement(15540533..15553106)
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AA seq
971 aa
AA seq
DB search
MEADLYDEFGNYIGPELDSDDDEDDLDAVDRDVDEADDDEDDEPADADEDVPGMEVVLHE
DKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKHKRFTLMEQELPTTVYDMEFLAD
LMDGPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDVDLRYTDILFTEQERGVGI
KSAPITLVLPDSRGKSYLFNIMDTPGHVNFSDEVTASIRLSDGIVLFIDAAEGVMLNTER
LIKHAVQERMAITICINKVDRLIGELKLPPTDAYYKLRHIVDEVNGLLSTYSTDENLVVS
PLLGNVCFASSQYSVCFTLGSFAKIYSDTYGDINYNEFAKRLWGDIYFNPKTRKFTKKAP
SSNSQRSFVEFVLEPLYKILSQVVGDVDTSLPRVLDELGIHLTKEELKLNIRPLLRLVCN
RFFGEFTGFVDMCVHHIPSPQEGARNKIEHTYAGGLDTDLGEAMVECDPDGPLMCHTTKM
YSTEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWISVARYQIEV
NRVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELP
KMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVT
FCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTK
YDWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCD
EPIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPAD
CVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFALSVF
HHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLEL
AKQDVVLNYPM
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgatctgtatgacgagtttggaaactacatcggcccagagctcgactctgat
gacgatgaagatgatctggatgcagtggacagagacgttgacgaggctgatgatgatgaa
gatgatgagcctgctgatgctgatgaggatgtccctggcatggaggtggtgctgcatgag
gacaagaagtactatcctacagcagaggaggtttatggacccgaagtggaaactatagtc
caagaggaagacacacaacctctcacagagcccatcatcaagcctgtgaagcacaagcgg
ttcaccctgatggagcaggagttacctaccactgtttatgatatggaattccttgctgat
ctgatggacggtcctgagctaatccgcaacgtcaccctgtgtggtcatcttcaccacggc
aagacctgtttcgtggactgcctgattgaacagacgcacccagaaatcaggaagagagac
gatgtggatctccgatacacagacatcctctttacagaacaggagagaggcgttggtatc
aagagcgcccccatcacattggtcctgccagactccagaggaaagtcctaccttttcaac
atcatggatacaccaggacacgtgaacttctctgatgaggtcactgctagcatccggctg
tcagacggtatagtcctcttcatagatgcagcagaaggagtgatgctgaacacagagcgc
ctgatcaaacatgccgttcaggagcgtatggccatcaccatctgcatcaacaaggtggac
cggctcattggggagctcaaactgcctcctaccgatgcttattataaactgcgccacatt
gtggatgaggtcaatggtttgctcagcacttactccacagatgagaacttggtggtgtct
cccctccttggaaatgtgtgctttgccagctctcagtacagtgtctgtttcacactgggg
tcctttgcaaagatctactcggacacctatggtgacatcaactataatgagtttgccaag
aggctttggggagacatttatttcaaccccaaaactcgcaagttcacaaagaaagctccc
agcagtaactctcagcgcagctttgtggaatttgttctggagcctctctacaaaatcctc
tcgcaggtggttggcgacgtggacacgtctcttcccagagttctggatgaactggggatc
cacctgactaaagaggaactgaagctgaacatcagacctttgctgaggctggtctgtaac
cgcttctttggagagttcactggctttgtggacatgtgtgtacatcacatcccctcacca
caggagggtgctaggaacaagatagagcacacatatgctggaggtctggacacggacctg
ggtgaggccatggtcgagtgcgaccctgacggtcctttgatgtgccacaccaccaagatg
tacagcacggaggacggcgttcagttccatgcgtttggccgagtgctgagcgggaccatt
caggccggtcagccggtcaaggttctaggagagaactacacccttgaagatgaggaggac
tcccaggtctgcactgtgggccgtctctggatttcagttgccagataccaaatcgaagtg
aaccgagttcccgctggcaactgggttctaatcgaaggttgcgaccagccaatcgtcaag
accgcaacgatcacggagcccagagggaacgaagaggctcagattttcaggccactgaag
ttcaacacggcatcagttataaagatcgcagtggagcccgtcaacccatcagagctgccg
aaaatgttggacgggctaaggaaggtcaacaagagctacccgtctctcaccaccaaggtg
gaggagtctggagagcatgtgatcttagggacaggagagctctacctggactgcgtcatg
cacgacttgcgcaagatgtactctgagatcgacattaaagttgctgaccccgtcgtgacc
ttctgtgaaacggtcgtagagacatcatcactcaagtgcttcgctgagacgccaaacaaa
aagaataagatcaccatgatcgcggagcccttggagaaggggctggccgaggacatcgag
aacgaagtggtgcagatcacatggaacaggaaaaagctgggcgagttcttccagaccaag
tacgactgggatctgctggctgccaggtccatctgggccttcgggccggacaccacggga
ccaaacatcctcgtagatgacaccctgccctctgaggtggacaaggcgctgctcggctcg
gtcaaggacagcatcgttcagggcttccagtggggcaccagagaggggcctctgtgtgat
gagcccatcaggaatgtcaagtttaagatccttgacgcagtcatcgctcaggagcctctc
caccgaggcggcggccaggtcatcccgaccgccaggagagtggtgtactctgctttcctc
atggccactccaaggttgatggagccctattactttgtcgaggttcaggctccagctgat
tgcgtctctgcggtctacacggtgctcgctcggagaagaggtcacgtcacccaggatgca
cctatcccagggtctcctctctacaccataaaggcgttcatcccggccatcgactccttc
ggctttgagacggaccttcgcacacacacacagggacaggcgttcgccctgtcggtgttc
caccactggcagattgttcccggtgacccgctggacaagagtattgtgatcaggcctcta
gagcctcagccggccccccacctggccagagagttcatgatcaagacccgaaggcgcaag
ggtctgagtgaggatgtgagcatcagcaagttcttcgatgaccccatgttgttggagctg
gccaagcaggacgtggtgctcaactacccgatgtga
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