Pseudoliparis swirei (Mariana hadal snailfish): 130189734
Help
Entry
130189734 CDS
T09868
Symbol
slit1b
Name
(RefSeq) slit homolog 1b
KO
K06838
slit 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130189734 (slit1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130189734 (slit1b)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Axon guidance molecules
130189734 (slit1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRR_1
LRR_9
LRR_14
hEGF
EGF_TEN
LRRCT
EGF_Teneurin
LRR_LRWD1
EGF_DL_JAG
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
130189734
NCBI-ProteinID:
XP_056264639
LinkDB
All DBs
Position
24:complement(1563677..1600950)
Genome browser
AA seq
1544 aa
AA seq
DB search
MVKQRRGSAEDGGGWRAAGGARPSGPRGVLAWAVLALAAAAAGRGGVGACPAPCSCLGNT
VDCHGLGIHAVPRNIPRGTERLDLNGNNLTVVTKTDFSGLKHLRVLHLMENQISNVERGA
FDELKELERLRLNKNRLSQLPELLFQKNKGLSRLDLSENVIQAIPRRAFRGATDLKNLQL
DKNHISCIEEGAFRALRALEVLTLNNNNISTIPVSSFNHMPKLRTFRLHSNSLRCDCHLS
WLSPWLRQRAPLGLFTQCGAPPALRGLNLAELRKTDFACTGHGGSAFVQPCSLASGSCPA
MCSCSNNIVDCRGRGLTAIPAHLPEAMTEIRLEQNGIKSVPPGAFTSYKKLRRIDLSNNQ
ISEIAPDAFHGLRALNSLVLYGNKITELPGGVFDALSSLELLLLNANKIHCIRAAVFKDL
ENLSLLSLYDNKIQSLAKGTFTALRSIQTLHLAQNPFVCDCGVKWLADFLRSDPIETSGA
RCASPRRLANKRIAQIKSSKFRCSAKEQYLIPGTEARRVSLQCNSRPSCPPKCRCEANVV
DCSNLRLTSFPQELPPSTEELRLNNNDLSVLEATGAFKGLTQLKKINLSNNKISEIEDGA
FDGASAAVELHLTANHLEAVRGGMFRGAGGLRMLMLRNNRISCLHNSSFTGLSHVRLLSL
YDNKLSSIQPGTFDTLPHLSTLTTHTHTHTHTSTHTRTRVVTAALPSGAPVDDGCPAAPR
CPAPCSCLDTVVRCSNKQLQALPRGLPRNATELYLDGNQFTSVPKDLATFKYLQLVDLSN
NKISYLSDDSFSNMSQLTTLILSYNSLRCIPPLALGGLRSLRLLSLHGNDISELQRGIFN
DVVSLSHLAIGANPLYCDCRLLWLSDWVRSGYKEPGIARCAGPAGLEGQLLLTTPADHFL
CHGPVEPSVQAKCSPCVSSPCQNQGVCQVHDTELYTCTCKAGFTGQHCEAPVDACLSNPC
TNEGVCISEEQTGGFSCACAFGFHGTFCEGNVDDCQDHGCENGATCVDDVGNYTCTCGPN
YTGLLCEEEEGSCSPGRNRCQHQSTCVSTPTGSRCVCVPGWVGPDCSLDYDECLDHRCQN
GAQCTDQLDGYRCLSSSSSSGVLCEVAPPAPSPCRPSPCQRGALCVAAAGVALCECPPGF
EGPSCEKLVGLNFVDRDSYVTLEDVRSWPQANITLQVSTAEDNGILLYNGDDEPIAVELH
QGHVRVTYDPGNQPATAIYSSETVNDGRFHTVELVTFNRMVNLSVDGGEPVSLDSRARRR
PAAGDAPLYVGGMPEAAMDAAPGSSSSPILNGSSFHGCIRNLYINHELQDFTRGRMEPGV
EPGCRACRELHCRHGVCQPNAAQGPRCHCQSGWAGQHCDQPMAAGLSGADVVTAATGVEP
CDGSKCASGVCVALDARTYRCDCAEGYRGALCDQQGAPEGSCQRGAPCLRGRCQQAEDGE
ERCVCEPGFTGESCDIESPCLGEPVRDVHRVQRGVVLCQTSKPFSWVECRGRCRALAEPD
AAAAASCCAPLRVRRRRLSFECDDGTSFTQDVEKPVECGCKECV
NT seq
4635 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcagaggagaggatctgctgaggatggaggaggctggagggcggcgggcggc
gctcgtccgtccgggccgcgcggcgtgctggcgtgggccgtcctggcgctggcggcggcg
gcggcggggcgggggggcgtgggggcgtgtccggcgccctgcagctgcctgggcaacacg
gtggactgccacggcctggggatccacgccgtgcccaggaacatccccagaggaaccgag
aggctcgacctgaacggaaacaacctgacggtcgtcaccaagaccgacttctccggcctg
aagcacctccgagtcctccatctgatggagaaccagatcagcaacgtggagagaggagcc
tttgatgagctgaaggagctggagagacttcgcctcaacaagaaccgtctcagccagctt
ccagagctgctgttccagaagaacaaaggcctgtcccgactggacctgagtgagaacgtc
atccaggcgatccccaggagagccttcaggggggccacggacctcaagaaccttcagctg
gacaagaaccacatcagctgcatcgaggagggggccttccgggccctgagggccctcgag
gtcctcacgctgaacaacaacaacatcagcaccatccctgtctccagcttcaaccacatg
ccgaagctccgcaccttccgcctccactctaactccctgcggtgcgactgccacctctcc
tggttgtccccgtggctgcgccagcgggcgccgttgggcctcttcactcagtgcggcgct
cctccggcgctccggggcctgaacctggccgagctgcgcaagaccgacttcgcctgcaca
ggtcacggcggcagcgccttcgtgcagccgtgcagcctggcgtccggctcctgccccgcc
atgtgctcctgcagcaacaacatcgtggactgccgggggcggggcctcaccgccatcccc
gcccacctccccgaggccatgaccgagattcgtttggagcagaacggcatcaagtcggtt
cctccgggcgccttcacctcctacaagaagctgcggcgcatagacctgagcaacaaccag
atctctgagatcgctccggatgccttccacggcctccgggccctcaactccctggtcctg
tacgggaacaagatcacagagctgcctggcggtgtgttcgatgccctctcctctctggag
ctgctgctgctgaacgccaataagatccactgcatccgagccgccgtgttcaaggacctg
gagaacttgtctctgctgtcgctttacgacaacaagatccagagtctggccaaaggaacc
ttcacggccctgaggagcatccagaccctccacctggcccagaacccctttgtgtgcgac
tgcggcgtgaagtggctcgctgacttcctgcgctccgaccccatcgagaccagcggggcc
cgctgcgcgtccccacgccgcctcgcaaacaagcgcatcgcccagatcaagagcagcaag
ttccgctgctccgctaaggagcagtacctcattccaggtactgaggcccgccgtgtgagc
ctgcagtgtaacagccggccttcgtgtcctcctaagtgtcgctgtgaggccaacgtggtg
gactgctccaacctgaggctcaccagcttcccccaggagctgcccccctccacggaggag
ctgcgtctcaacaacaacgacctctccgtgctggaggccaccggcgccttcaagggcctc
acgcagctcaagaagataaacttgagcaacaacaagatctctgagatcgaggacggcgcc
ttcgacggcgcctcagcggcggtggagcttcacctgacggccaaccacctggaggccgtg
agggggggcatgttcaggggggcgggggggctgcgcatgctcatgctcaggaacaacagg
atcagctgcctccataacagcagcttcactggcctcagtcacgtccgtctgctgtcgctg
tacgacaacaagctgagctccatccagccgggaaccttcgacacactgcctcacctgtcc
accctgacgacacacacacacacacacacacatacgagcacacacacacgcacacgcgtg
gtgacggcggcgctcccctcaggcgccccagtggacgacggctgccccgcggcgccccgg
tgccccgccccctgctcctgcctggacacggtggtccgctgcagcaacaagcagctgcag
gcgctgcccagagggttgccacgcaacgccaccgagctgtatctggatggaaaccagttc
accagtgttccaaaggatttggccacattcaaatacctgcagctcgtagatctgagcaac
aataaaatcagctatctgtcagatgactccttctccaacatgagccagctcaccaccctg
atcctcagctataactctctgcgctgcatccctcctctggccctgggaggcctccggtct
ctgaggctgctctctctccatggcaacgacatctcagagctgcagcgcggcatcttcaac
gacgtggtctccctgagtcacctggcgatcggggccaaccccctgtactgtgactgccgc
ctcctgtggctctctgattgggtgaggagcggctacaaggagccgggcatcgctcgctgt
gctggacctgcaggactagagggacagctgctgctcaccacacctgctgaccacttcctg
tgtcacggtccagtggagccctcagtccaggctaagtgtagtccatgtgtgtcgtctccc
tgtcagaaccagggtgtgtgtcaggtccacgacacggagctgtacacctgcacctgcaag
gccggcttcacgggtcagcactgtgaggctccagtagacgcgtgtctcagtaatccgtgc
accaacgaaggagtttgtatcagtgaggagcaaacgggaggattcagctgtgcgtgtgcg
ttcgggttccacgggacgttctgcgaggggaacgttgacgactgtcaggaccacggctgt
gagaacggagccacctgtgtggacgacgtgggcaactacacctgcacctgtggccccaac
tacacaggcctgctctgtgaggaagaggaggggtcgtgttctccaggtagaaaccgctgt
cagcatcagtccacctgcgtcagcactccgaccggctccaggtgtgtgtgtgtcccaggc
tgggtggggccagactgcagtctggactacgatgagtgtctggatcatcgctgtcagaac
ggagctcagtgcacagaccagctggacgggtaccgctgcctctcctcctcctcctccagt
ggcgttctctgcgaggtggccccccccgccccgtccccgtgccgtccgtccccgtgtcag
cgtggcgccctctgcgtggcggcggcgggcgtggccctgtgtgagtgtcctccgggcttc
gagggcccgagctgtgagaagctggtcgggctgaacttcgtggaccgggactcctacgtc
acgctggaggacgtcaggagctggcctcaggccaacatcaccctgcaggtgtccacagcg
gaggacaacggcatcttgctctacaacggagacgacgagccaatcgctgttgagctccat
cagggtcacgtcagggtcacgtatgaccccggtaaccagcccgccaccgccatctacagc
tcggagacggtgaacgacgggcgcttccacacggtggagctggtgaccttcaaccggatg
gtgaacctgtctgtggacggcggcgagccggtcagcctggacagccgggcgcggcgccgg
ccggcggcgggcgacgcgccgctctacgtcggaggtatgcccgaggcggcgatggacgcc
gctccgggctcctcctcctcgccgatcctcaacgggtccagttttcacggctgcatccgg
aacctctacatcaaccacgagctgcaggacttcacccgcgggcgcatggagccgggggtg
gagccgggctgccgggcctgccgcgagctgcactgccggcacggcgtgtgccagcccaac
gccgcgcaggggcctcggtgtcactgccagtcggggtgggcgggacaacactgtgaccag
ccaatggcggcaggcctgagcggagcggacgtggtcaccgcggcgaccggcgtggagccg
tgcgacggcagcaagtgtgcgagcggcgtgtgcgtggcgctggacgcgcggacgtaccgc
tgcgactgcgcggagggataccgcggcgcgctgtgcgaccagcagggggcgccggagggc
tcctgccagcggggggcgccgtgtctgcgtggtcgctgccagcaggcggaggacggagag
gagcgctgcgtctgcgagccgggattcaccggggagagctgtgacatagagtccccgtgt
ctcggtgagccggtgagagacgtccaccgcgtgcagcgcggtgtcgtcctctgccagacg
tccaagccgttctcgtgggttgaatgtcgcggtcggtgccgggcgctcgccgagccggac
gccgccgccgccgcttcctgctgcgctcccctgagggtccggcgccggcggctctcgttc
gaatgcgacgacgggacctcgttcacgcaggatgtggagaagcctgtggagtgtggctgc
aaggagtgtgtgtag
DBGET
integrated database retrieval system
