Pseudoliparis swirei (Mariana hadal snailfish): 130189768
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Entry
130189768 CDS
T09868
Symbol
kdm2aa
Name
(RefSeq) lysine (K)-specific demethylase 2Aa isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130189768 (kdm2aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pswi03000
]
130189768 (kdm2aa)
04121 Ubiquitin system [BR:
pswi04121
]
130189768 (kdm2aa)
03036 Chromosome and associated proteins [BR:
pswi03036
]
130189768 (kdm2aa)
Enzymes [BR:
pswi01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
130189768 (kdm2aa)
Transcription factors [BR:
pswi03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
130189768 (kdm2aa)
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130189768 (kdm2aa)
Chromosome and associated proteins [BR:
pswi03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
130189768 (kdm2aa)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
130189768 (kdm2aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
DUF7885
F-box
Cupin_8
PHD
C1_1
Nop14
Motif
Other DBs
NCBI-GeneID:
130189768
NCBI-ProteinID:
XP_056264677
LinkDB
All DBs
Position
24:complement(11863235..11882955)
Genome browser
AA seq
1252 aa
AA seq
DB search
MGRAGTRRRYHDDGISDEEIDGRRMFDLEEKVHSQRFGSDRILRIEGRDLTYEFVQKGGL
RDPIMFEKPDGLGIKMPDSDFSVNDVKMFVGSRRMIDVMDVSTQKGTEMSMAQWARYYET
PPSQREKLYNVISLEFSHTKLENLVRRPATVDLIDWVDNMWPRHLKERQRDSTNSITDMQ
YPKVQKYCLMSVEGCYTDFHIDFGGTSVWYHILRGGKVFWLIPPTPQNLELYENWVLSGK
QGDIFLGDRASDCQRIELKKGYTFIIPSGWIHAVYTPTDSMVFGGNFLHSFNIPMQLNIC
NIEDRMRVPLKFRYPFYDEMCWYVLERYVFSLTKTSYLTPEFQKHTLGIGLKKPSGSDSV
SEQVKEEVEDEEDDEDDDEEESGSEEEASEQQSDKPAVKVNLTSLELEGMWNLLGKLEAL
PSNKKCVPAGIHNAPALITHIKALLKEHANDNPKLSYTGKPIVKWPKRPSWYQPPPPPPP
PPPPPRPKFSSTPIIPRPQKPASSMSVLRRRRVRCKRCEACMRPECGDCNFCRDMKKFGG
PGKLKQTCVLRQCLSPGLPLSAVCEICKEPNQEESGDPSLTLMECSNCAQIVHPACLTVQ
GEGVMNKDLPSCWECPKCVQGITDPEQSKGDTSEGLPAKRKSSTLLDARMAKIYRRQRHS
RDGDDSASDEDDEASQRGRTALHSRGGSHSSRRGFGANRRGLLRGTAHRGSRGGFMSSGS
SSALKLKRGMGMREGGRRGRGVRLRGGSRMQRRGDESEESDDDDDEDEEDEEDEEEGDSE
EGDKERLHRRHRRRHRTDDDEDDDEDEDSEGQEFDPEEEEMDTLEDEEEDEEEELEEGRW
DSDPEPPVLLVSDLNDDLLTGSYLTVTLQRPHKAKRHSGSIVPKLEAAMGLRTAASGGQQ
GFIQRKSALSKASRLRSTDATADSLTPRGPGRPRLRANHRDRGPRDHSATSSEEEEAAAS
LAHSSLSPPSLLSLPSFKDVGNERGGEKEVWVSVFRFFNRAELLACMTVCKAWYKWSCDK
RLWTHVDVSRCSPLSNQALAGIIKRLPTSLDLSWTPLAKRQLNCLLTRLPGLRELRVPGL
SWSCLSAMASPTLPYLRVLDLRWCEGLKDAQIKEIIIPPGSESSRSRLRNMVTLRLSGLD
ISESTVRLLQRHMPQLERLDLAHCKDITDSSIALLAAAGTHTRNSLTELTLTGCSELTDG
CLSYLKRLSSLTLLDLRGCKSISRRACDTFISDLSHVALFCMMEEKLIQRLD
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgggtcgggccggtacccggcgacgttaccatgacgacggcatctcagatgaagagatt
gatggaaggagaatgtttgacctggaggagaaagtccacagtcagaggttcggctctgac
cgaatcctgcgcattgagggaagagacttaacatacgagttcgtccaaaaaggcggcctg
agggacccaatcatgtttgagaagcccgatggactaggaatcaagatgcctgattctgac
ttcagtgtcaatgacgtcaagatgtttgttggcagcagacgtatgatagatgtgatggat
gtgagcactcagaaggggacagagatgtccatggctcagtgggcacgttactatgagacg
ccaccatctcagcgagagaagctctataatgtcatcagcctggagtttagccacactaaa
ctggagaacctggtccggagacctgccacagtagatcttatagactgggtggacaacatg
tggcctcgtcacctgaaagagagacaaagagactcaaccaactccatcacggacatgcaa
taccccaaagttcagaaatattgtctgatgagtgtcgagggatgctacacagactttcac
attgactttggagggacctctgtgtggtaccacatactccgaggaggcaaggtgttctgg
ctgatccccccgacccctcagaacctggagctgtatgaaaactgggtgttgtcggggaaa
cagggagatattttccttggagacagagcatctgactgccagaggattgagctgaagaag
ggctacaccttcattataccttcaggttggattcatgcagtctacacccctacggactct
atggtgtttggaggaaacttcctgcacagcttcaacatccccatgcaacttaacatctgt
aatatagaagacagaatgcgggttcctttgaagttccgttaccccttctacgatgagatg
tgttggtatgtgttggagcgctacgtcttcagcctgacaaagacctcctacctcactcca
gagtttcagaagcacactcttggcattggtctgaagaagccgtctggctcagattcagtt
agtgagcaggtgaaggaggaggtggaggatgaggaggacgacgaagacgacgatgaggaa
gagagtggcagtgaagaagaggcctcagagcagcagtctgacaagcctgcagtaaaagtt
aatttgacttcccttgagctggagggaatgtggaacctgctgggtaaactggaggctctt
ccctccaacaagaagtgtgtcccagcagggatacacaacgccccggcactaatcacacac
atcaaggctctactaaaggaacatgccaatgacaatccaaagctatcctacacaggaaaa
cctatcgtcaagtggccaaagagaccctcatggtaccagcctcctcctcctcctcctcca
ccaccacctcctcctcgtcctaagttctcctccacacccatcatcccacgaccacagaaa
ccagcctcctccatgtccgtgctgagacggcgcagggtcaggtgtaagcgctgtgaagcc
tgcatgagaccagagtgtggagactgtaacttctgcagagacatgaagaagtttggagga
ccagggaaactcaagcagacctgtgtgctccgacagtgtctgtctccgggccttcctctg
tctgcagtttgtgagatctgcaaggagcccaatcaggaggaaagcggagacccctccctc
actctgatggaatgttccaattgtgcgcagatagtccatcctgcctgcctcacggttcag
ggggaaggagtaatgaataaagacctgcctagttgctgggagtgtccaaagtgtgtccaa
gggattactgaccctgagcagtctaaaggagacacaagtgaaggccttccagcaaagcga
aaatcttccaccctgctggacgctcgcatggctaaaatttaccgacgacagagacacagc
cgcgacggagacgactctgccagtgatgaggatgatgaagcctctcagagaggaaggacg
gctcttcattcccgaggggggagtcactcttccaggagggggttcggtgccaacaggaga
ggcctgctcagaggcacggcccacagaggaagcagaggagggttcatgtcttctggctcc
tcctccgccctcaagctaaagcgagggatgggcatgagagagggtggacggaggggacga
ggggtgaggctgaggggaggctcaaggatgcagcgaagaggagatgaatcagaggagtcg
gacgacgatgacgacgaagatgaggaagatgaggaagatgaggaagaaggggacagtgaa
gaaggtgacaaggaacgactgcatcgacggcataggaggaggcacaggactgatgatgat
gaagatgatgatgaagatgaggacagtgaggggcaggagtttgaccctgaagaggaggag
atggacacgctggaagatgaagaggaagacgaagaggaggagttggaggaaggccgctgg
gattcagacccggaacctccagtccttctggtgtctgatctgaatgatgacctgctgact
ggctcctacctgactgtcactctacagcgcccccacaaggccaagagacactctggctct
atagttccaaagctagaagcagccatgggtctgaggacagcagcgtctggtggtcagcag
ggcttcatccagagaaagtctgctctgtccaaagcttcacgactcaggagcactgacgca
acagctgacagcttaaccccaagagggcctggcaggccacgcctgcgggcgaaccatcgc
gacagaggccctcgagatcactctgcaacttcttcagaggaagaagaagccgctgcttct
cttgcacattcctccctgtctccgccgtccctgctgtccctgccgtcctttaaggacgtg
ggcaacgaaagaggaggcgagaaagaggtgtgggtgtctgtgttcaggttcttcaacaga
gccgagctgctggcctgcatgaccgtctgtaaggcctggtacaagtggagctgtgacaag
cgtttgtggactcatgtggacgtgagtcggtgcagcccgctcagtaaccaggccctggca
ggcatcattaaacgcctgcccacctctctggacctgtcctggacccccttggccaagagg
cagcttaactgtctgctcacaaggctcccaggtctgagggagttgagggtacctggtctg
tcctggtcctgtctatcagcaatggcctctcccactctgccctacctgcgggtgctggac
ctgcgttggtgtgaaggccttaaagatgcccagattaaagagatcattatcccacctggt
tcagagtcgtctcgcagcagactgaggaacatggtgacgctgcgtctgtcgggtctggac
atcagtgagtccactgtgaggctgcttcagcgccacatgccccagctggagagactggac
ctggctcactgcaaggacataacggactcgtctatcgccctgctggctgcagccgggact
catacccgcaactctctcactgaactcacactgacaggttgcagtgagctgacagacgga
tgtctgtcctacctaaagcgtctttcttctctgactctgctcgacctcagaggctgtaag
agcatcagcagacgagcctgtgacaccttcatctctgacctgtcccacgttgccctcttc
tgtatgatggaggagaagctcatccagcgcctggattaa
DBGET
integrated database retrieval system
