KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130192387
Entry
130192387         CDS       T09868                                 
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
  KO
K03175  TNF receptor-associated factor 6 [EC:2.3.2.27]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010  MAPK signaling pathway
pswi04120  Ubiquitin mediated proteolysis
pswi04140  Autophagy - animal
pswi04144  Endocytosis
pswi04620  Toll-like receptor signaling pathway
pswi04621  NOD-like receptor signaling pathway
pswi04622  RIG-I-like receptor signaling pathway
pswi05132  Salmonella infection
pswi05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130192387 (traf6)
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    130192387 (traf6)
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    130192387 (traf6)
   04140 Autophagy - animal
    130192387 (traf6)
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    130192387 (traf6)
   04621 NOD-like receptor signaling pathway
    130192387 (traf6)
   04622 RIG-I-like receptor signaling pathway
    130192387 (traf6)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    130192387 (traf6)
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    130192387 (traf6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pswi04131]
    130192387 (traf6)
   04121 Ubiquitin system [BR:pswi04121]
    130192387 (traf6)
Enzymes [BR:pswi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130192387 (traf6)
Membrane trafficking [BR:pswi04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Ubiquitin E3 ligases
    130192387 (traf6)
Ubiquitin system [BR:pswi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    130192387 (traf6)
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-RING_UBOX zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 CEP104_ZnF TRAF3_RING TRAF6_Z2 RING_XB3-XBAT31 DM zf-RING_11 zf-TRAF_2 U-box zf-rbx1 Prok-RING_4 zf-RING_6 DUF7310
Other DBs
NCBI-GeneID: 130192387
NCBI-ProteinID: XP_056268320
LinkDB
Position
4:31295173..31302398
AA seq 547 aa
MASFESNKGSLPEDGDEGEELSGCALAMMERERESLLSPSESPGAAFSSGSSSSSLQAAA
PLLGYDVEFDPPLESKYECPICLMALRNAIQTPCGHRFCKNCIEKSIRDAGQRCPVDNAR
LLEKQLFPDNFAKREILSLTVCCPNADCEEKMELRQLETHLARCQFATAPCPQCQQSVRT
SRLEEHATAECRRRPATCPDCGAHFYYEERELHGQQCPFASVTCQYCGTDLIRDQIESHC
DTDCPKAPIACNFSTFGCKERMQRHDLAEHMQEFTQMHMRYMAEFLRGLRLDGAAHKSPW
TPGPSEDQGAMAACGGGGCAPTQPTKELREMDGRLVKQDHQLRELTILKETQAGQLTELR
RRVSTLEDTVKDLESQQCQGVFVWRLRGFSAHLRSQEAGLPVVEHSPGFYTGRPGYKLCL
RLHLQTPSAPRCSNFISLFVHTMQGAFDGQLSWPFQGTIRLAILDQGGEQQHHVEAMETK
PDLLAFQRPVIQRNPKGFGYVTFLHLQQLSQRAFVKDDTLLVRCEVTPRFDGPAVQPRGP
EASVSRD
NT seq 1644 nt   +upstreamnt  +downstreamnt
atggcgtcctttgaaagcaacaaggggagtctgccggaggacggcgatgagggcgaggag
ctgtccggctgcgcgctggcgatgatggaaagggagcgggagtccctcctcagcccgtcg
gagagccccggcgccgccttcagcagcggtagttcctcctccagcctccaggccgccgcc
cccctcctgggctacgacgtggagttcgaccccccgctggagagcaaatacgagtgcccc
atctgcctcatggctctgaggaacgccatccagacgccgtgcggccaccgcttctgcaag
aactgcatcgagaagtccatccgtgacgcgggccagaggtgccccgtggacaacgcgcgg
ctgttggagaaacagctgttccccgacaacttcgccaaacgggagatcctgtcgctgacc
gtctgctgcccgaacgccgactgcgaggagaaaatggagctccggcaattagagactcat
ctggcgcgttgccagtttgccacggcgccgtgcccccagtgccagcagtcggtgaggacg
agccgcctcgaggagcacgcgaccgccgagtgccgacggagaccggcgacctgtccggac
tgcggggcgcacttctactacgaggagagagagctccacgggcagcagtgtcccttcgcc
agcgtgacgtgccagtactgtgggacggatctcatcagagaccagatcgagtctcactgc
gacaccgactgtcccaaagcgcccatcgcctgtaacttcagcaccttcgggtgcaaggag
cggatgcagcgccacgacctggcggagcacatgcaggagttcacccagatgcacatgcgc
tacatggccgagttcctgcgcggcctcaggctcgacggcgccgcgcacaagtccccgtgg
acgccggggccgtccgaggatcagggggcgatggcggcctgcggcggcggcggctgtgcg
ccgactcagccgacgaaggagctccgggagatggacgggcgtctggtgaagcaggaccac
cagctgcgggagctcaccatcctcaaggaaacgcaggccggccagctgacggagctccgg
cgccgcgtgtccacgctggaggacacggtgaaggacctggagtcccagcagtgtcagggc
gtcttcgtgtggcgcctgcgcggcttctccgcccacctgcgcagccaggaggcggggctc
cccgtggtggagcacagccccggcttctacacgggccgcccgggctacaagctgtgcctg
cggctgcacctgcagacgcccagcgcgccgcgctgctccaacttcatctcgctgttcgtg
cacaccatgcagggcgccttcgacgggcagctgagctggcccttccagggcaccatccgc
ctggccatcctggaccagggcggcgagcagcagcaccacgtggaggccatggagaccaag
cccgacctgctggccttccagaggcccgtcatccagcgcaaccccaagggcttcggctac
gtcaccttcctccacctgcagcagctgagccagagggcgttcgtgaaggacgacacgctg
ctggtccgctgcgaggtcacgccgcgcttcgacggcccggcggtgcagccccgggggccc
gaggcctcggtgtcgagggactga

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