Pseudoliparis swirei (Mariana hadal snailfish): 130196697
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Entry
130196697 CDS
T09868
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04137
Mitophagy - animal
pswi04141
Protein processing in endoplasmic reticulum
pswi04210
Apoptosis
pswi04217
Necroptosis
pswi04621
NOD-like receptor signaling pathway
pswi04622
RIG-I-like receptor signaling pathway
pswi04920
Adipocytokine signaling pathway
pswi05132
Salmonella infection
pswi05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130196697
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130196697
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130196697
09143 Cell growth and death
04210 Apoptosis
130196697
04217 Necroptosis
130196697
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
130196697
04622 RIG-I-like receptor signaling pathway
130196697
09152 Endocrine system
04920 Adipocytokine signaling pathway
130196697
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130196697
09171 Infectious disease: bacterial
05132 Salmonella infection
130196697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130196697
04121 Ubiquitin system [BR:
pswi04121
]
130196697
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130196697
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130196697
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130196697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-RING_4
zf-C3HC4_2
zf-RING_5
zf-C3HC4_4
Sina_ZnF
zf-RING_6
MATH
zf_C2HC_14
Motif
Other DBs
NCBI-GeneID:
130196697
NCBI-ProteinID:
XP_056274995
LinkDB
All DBs
Position
7:29774875..29799089
Genome browser
AA seq
569 aa
AA seq
DB search
MAAQEQSPPSSLEGNKPGFPKKILANSLEDKHLCNSCQKVLRRPLQAQCGHRFCSFCFNK
IVSSGPQKCSACIKEDLFEEPTSILKQGGAFPDNAARREVEALAAVCPNEGCTWTGSIKE
FEAGHEGKCDFMIILCPSCKELMRANEQERHNERECPERTLNCKYCKEPFLLKNIKAHDE
ICPKYPMICEGCAKKKIPREKYVDHVKFCSKCKAPCRFHVVGCDASVEKEKLHDHERQCS
YEHLNLLLHFIMGIKVSLESLQPQSLEVAGHKLQELHRSLRDLELKMSQMGGAAAAAGAL
ATPPAAACAPRPAVAFTPLPSAALQLWSEKAKVAELSRRCLELEVKVGTFENIVCVLNRE
MERSCATMEAYNRQHRLDQDKIEILNNKVRQLERTVSLRDLSVVEMEGKMREMSAATYDG
IFVWKISDFTKKRQDAVAGRAPAMFSPAFYTSKYGYKMCLRIYLNGDGTGRGTHLSLFFV
VMRGHSDALLKWPFNQKVTLMLLDQNNREHIIDAFRPDVSSSSFQRPVSDMNIASGCPLF
CPLAKLDSKNSYIRDDTIFIKAIVDLTGL
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggctgcacaggagcagtctccaccatcttccctggaaggcaacaaacccggcttcccg
aagaagattttggccaacagcctcgaggacaagcatctgtgcaactcgtgccagaaagtg
ttgaggaggcccttgcaagcacagtgcggacaccgcttttgttcgttctgtttcaacaaa
attgtgagttccggcccacagaagtgcagcgcttgtatcaaagaagacttgtttgaggaa
cccacctccattctcaagcaaggcggtgctttccccgacaatgcggcccggagagaagtg
gaggccctggcggccgtctgtcccaacgaaggctgcacctggacgggcagcatcaaagag
tttgaggccggccacgagggcaagtgtgacttcatgatcatcctgtgtccgtcctgcaaa
gagctgatgagggccaacgagcaggagcgccacaacgagagggaatgtccggagaggacg
ctcaactgcaaatactgcaaggaacccttcctgttgaagaacatcaaggctcacgatgaa
atctgtccaaagtacccgatgatttgcgaaggctgtgcgaagaaaaagatccccagagaa
aagtatgtggaccatgttaagttctgcagtaaatgtaaagcaccgtgcagatttcatgtt
gttggctgcgatgcgtctgtggagaaggagaagctgcacgaccacgagcgccagtgttcc
tacgagcacctcaacctgctgctgcacttcatcatgggcatcaaggtgagcctggagagc
ctgcagccccagagcctggaggtggccggccacaagctgcaggagctccaccgctccctc
agggacctggagctgaagatgagccagatgggcggggccgcagcggccgccggcgccctc
gccacccccccggcggcggcgtgcgccccgcgtccggccgtcgccttcacgccgctgccc
agcgccgcgctgcagctctggagcgagaaggccaaggtggcggagctgagccgccgctgc
ctggagctggaggtcaaagtgggcacgttcgagaacatcgtgtgcgtcctcaaccgcgag
atggagcgctcctgcgccaccatggaggcctacaaccggcagcaccggctggaccaggac
aagatcgagatcctcaacaacaaggtgcgtcagctggagcgcacggtgagcctgcgggac
ctctccgtcgtggagatggaggggaagatgagggagatgtcggcggctacgtacgacggc
atcttcgtctggaagatctccgacttcaccaagaagaggcaggacgccgtggcgggccgc
gcccccgccatgttctcccccgccttttacaccagcaaatacggctacaagatgtgcctg
aggatctacctgaacggagacgggacgggccgcggcacacacctgtccctgttcttcgtg
gtgatgagaggccacagcgacgcgctgctcaagtggccttttaaccagaaggtcaccctg
atgctgctggaccagaacaacagggagcacatcatcgacgccttccggcccgacgtctcc
tcctcgtccttccagaggcccgtcagcgacatgaacatcgccagcggctgcccgctcttc
tgcccgctcgccaagctggactccaagaactcctacatacgcgacgacaccatcttcatc
aaggccattgtggacctcactgggctctag
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