Pseudoliparis swirei (Mariana hadal snailfish): 130198902
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Entry
130198902 CDS
T09868
Symbol
agrn
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04512
ECM-receptor interaction
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130198902 (agrn)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130198902 (agrn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pswi00535
]
130198902 (agrn)
Proteoglycans [BR:
pswi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130198902 (agrn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
NtA
Kazal_CFAI
EGF_laminin
SEA
EGF
Laminin_G_3
hEGF
NRG2_N
Motif
Other DBs
NCBI-GeneID:
130198902
NCBI-ProteinID:
XP_056277969
LinkDB
All DBs
Position
9:5453058..5713179
Genome browser
AA seq
2115 aa
AA seq
DB search
MGPQRILGAGRTALLLAGLLLVALGHRCAASCPERDLENREEEAKIVLTGTVDEIINMDP
VHNTYSCKVRVWRYLKGKSDVNREILLDGGNKLMIGGFGNPGICDNRVATGDTRIFFLNP
ALEAMGPEHKNELMLNSSLMRITLRNLEDVEHCVEAHKYINADKPPHFTPPQPPDGCRGM
LCGFGAACERDQADPAKAECVCKRVDCPSLVAPVCGSDSSTYSNECELEKAQCNTQRRIK
VLRKGPCSLKDPCADVACSYGSTCIQSSDGLSAKCMCPLGCDGRRQQTVCGSDGDDYRSE
CELHQHACKSQKNLRVQYQGPCDPCKDSENNLSSMCRVEALTREPLIFGLPELCMLDNEP
LCASDGHTYPSECALAATSMQKSIKLRKVHAGRCRRPERCQDECRFNAVCVVEPQNARCS
CDPIECDGTYKPVCGEDGRTHTNDCARRKAECLGRAPVPVKHPGPCDLSIPSPCREKACD
HGAVCVVKNGEPVCECPEACPQAADPVCGSDGHSYGSPCEMRAIGCALQRVVHVQHRGLC
DDACANCSFGAICDEQSAKCVCASECVDSHQAVCGSDGGTYDSECELHVRACQQQMDLRV
VSQGECKTCGSVVCAWGARCVQNKCECPQCPGEAFHPVCGSDGTTYDNECELGASSCMQR
RRIEAAKPGSCDEDCGSGGSGSGAESCEQDRCRMFGGSWDEDAEDDRCACDFSCHSVPHN
PVCGSDGKNYSNECQLKKARCEKQEHLLIQNQGHCAAAPATALPEPTPPQHCSLSVYGCC
HDNTTAAMGVGLAGCPSTCQCNVYGSYKGTCDPATGQCSCKPGVGGQKCDRCEPGFWNFR
GIVTENISGCTPCNCDATGSVRDDCEQMSGLCSCKTGTKGIKCNVCPDGSKMATYGCDKG
PEAPASCDDLVCGFGAACIEVDGQAHCECPPPDCDERNKTKVCGSDGVTYADQCQLRTIA
CRQDKDVAVQHFGQCTETISEPADRPTPNPPTTAAATITATTPAPFHPNMVEALPPPRTE
ETETAGRPPATTRSSKLTHNRASSVHNQPAGNADPSRGRHAPSATAIRSFEGSGSGEPSG
DEQIEEEEEQEGEEEAGSGIPAEASGAEEPADTTLMSTAVPSAEVRSSCDNEEFGCCPDG
RTASGTPEGANCPPLHASASFWDESRSATMKFSGFLHLDQVEGQEIFYTREMEDPKSELF
GETARSIESALNELFRKSDAHKDFLSVRVLNLAPSNSILAFVEANFKPDTRYTVEDIKAA
LLKQLKASRDTSIAVKKPEDENIHFTNYVVSSIPLLTTTTTTVASVTTAAPTIAMTTAAA
AATTTSRPPPTSPYITRRPPGTTRRPHGGRRTTTTTSTTTSAPITTPLPTTTAAATTMAA
AVTTAVPHPATTGAHVRGRLHHHKTQKPCGSHPCLHGGTCEDDGNDFSCMCPAGRGGSVC
EKVIRYFIPAFGGQSYLAFQTMSAYHTVRIAMEFRASEMSGLLLYNGQTGKKDFISLALV
NGKVELRFNTGSGTGTLVSKVPVTRGRWHQLVVTRNRRNAKLSVDNEPHIDGESPRGTDG
LNLDTDLFIGGVSEDMKQDVRERTAVAGGLVGCIRLLDVNNRMLNLQESGGDSVYGSGVG
ECGNNPCQPNPCRNAAACQVKEAEMFHCKCSKGFWGPTCADLHDPCEPNRCHQSSQCQAL
PEGGYKCECPMGREGRHCEKVAERRGAYMPLFNGDSYLELKGLHLYGQDLRQKVSMTVVL
KANDSNGLIFYNGQKTDGKGDFISLSLNDGVLEFRYDLGKGPATIRSKEAIQLNVWITVN
LERSNRKGEITVNKKDAVRGEAPNLHVDLNLKESLFVGGAPDYSRLARVAALTDGFKGTI
QEIILMGTPILREENALRSSDVAMFQDHPCSRKPCHNGGRCRPSLDAYECLCLNGFRGER
CENAVYEKAAGETEAIAFDGRTFVEYHNAVTKSEKALLVNKFELSVRTEATQGLVLWSGK
GVERSDYIALAIVDGRVQMTYDLGSKPVVLRSSVRVDTNRWIRIKASRALRDGSLQVGNE
AAVTGSSPLAATQLDTDGALWLGGLEELAVARRLPKAYSTSFIGCIKDVVVDGVELHLVE
DALNSPNILHCSAAK
NT seq
6348 nt
NT seq
+upstream
nt +downstream
nt
atgggtccccagcgcatactcggggccggccggacggcgctgcttctggcggggctgctg
ctcgtggctctggggcaccgctgcgccgcgagttgcccggagagagacctggagaaccgg
gaagaggaggccaaaatagttttgaccggcaccgtggacgaaataatcaacatggacccg
gtgcacaacacctactcctgcaaggtcagggtgtggcgctacttgaaaggcaagtccgac
gtcaaccgcgaaatcctcctggacggcggcaacaagctgatgatcggcggcttcggcaac
cccgggatctgcgacaaccgcgtggccacgggcgacacgcgcatattctttctcaacccg
gccctggaggccatgggcccggaacacaagaacgaactcatgctcaactcgagtctgatg
aggattaccctccgcaacctggaggacgtggagcactgcgtggaagcccacaaatatata
aatgcagacaaacctcctcacttcacgccgccgcagcctcctgatggctgcagagggatg
ctgtgcggcttcggcgccgcgtgcgagcgcgaccaggcggacccggccaaggccgagtgc
gtgtgcaagagggtggactgcccgtccttggtggcgcccgtgtgcggctcggactcgtcc
acctactccaacgagtgcgagctggagaaggcccagtgcaacacgcagaggcgcatcaag
gttctgcgcaaggggccctgctctctgaaggacccctgcgccgacgtcgcctgcagctac
ggcagcacctgcatccagtcgtcggacggcctctcggcgaagtgcatgtgccccctcggc
tgcgacggccggcgccagcagacggtgtgcggcagcgacggcgacgactaccgcagcgag
tgcgagctccaccagcacgcctgcaagagccagaagaacctgcgggtgcagtaccagggg
ccctgcgacccgtgcaaagacagcgagaacaacctgagctcgatgtgccgggtggaggcg
ctgacccgcgagccgctcatcttcggcctgccggagttgtgcatgctggacaacgagccg
ctgtgcgccagcgacggccacacgtaccccagcgagtgcgccttggcagcgacgagcatg
cagaaaagcatcaagctccggaaggtccacgcgggccgctgcaggaggccggagcgctgc
caggacgagtgtcgcttcaacgccgtgtgcgtggtggagccgcagaacgcccgctgctcc
tgcgaccccatcgagtgcgacggcacctacaagcccgtgtgcggcgaggacggccgcacg
cacaccaacgactgcgcccggcgcaaggccgagtgcctgggccgggcccccgtccccgtc
aagcacccggggccctgtgatctcagcataccgagcccctgccgggagaaggcgtgcgac
cacggcgcggtgtgcgtggtgaagaacggcgagcccgtgtgcgagtgccccgaggcgtgc
ccgcaggcggcggaccccgtgtgcggctccgacggccacagctacggcagcccctgcgag
atgcgggccatcggctgcgccctgcagagggtcgtccacgtccagcaccgaggcctctgt
gatgatgcctgtgccaactgctcctttggggcaatctgcgatgaacagagcgccaagtgt
gtgtgcgcgtcggagtgcgtggactcccaccaggccgtgtgcggcagcgacggcggcacc
tacgacagcgagtgcgagctgcacgtgcgggcctgccagcagcagatggacctccgcgtg
gtcagccagggagagtgcaaaacatgcggcagcgttgtttgcgcctggggggcccggtgc
gtccagaacaagtgcgagtgcccgcagtgccccggcgaggccttccacccggtgtgcggc
agcgacggcaccacctacgacaacgagtgtgaactcggcgcctcctcctgcatgcagagg
aggaggatcgaggcggcgaagcccggcagctgcgatgaagactgcggctcaggagggtcg
ggctcgggggcggagagctgcgagcaggaccgctgtcgcatgttcggaggctcgtgggac
gaggacgcggaggacgaccgctgcgcctgtgacttcagctgccacagtgtgccacacaac
ccggtttgtggctccgatggaaagaactacagcaacgagtgccagctgaagaaggccaga
tgtgagaaacaggagcacttgttgattcagaaccagggacactgtgcagcagctccagcc
acagctctgcccgagccgacgcccccccagcactgcagtctgtccgtgtacggctgttgc
cacgacaacacgacggccgccatgggagtcggactggccggatgtccgagtacctgtcag
tgtaatgtctacggctcctacaaggggacgtgcgacccggccacgggtcagtgctcctgt
aagccgggcgtcgggggacagaagtgcgaccgctgcgagccgggcttctggaacttccgt
ggcatcgtgacggagaacatcagcggctgcacgccgtgcaactgcgacgccacgggctcg
gtccgggacgactgcgagcagatgtcgggcctgtgctcctgcaagacgggaacgaagggc
atcaagtgcaacgtgtgtccagacggaagcaagatggccacgtacggctgcgacaaaggc
cccgaggccccggcgtcatgcgacgacctcgtgtgcggctttggagccgcgtgcatcgag
gtcgacggccaagcccactgcgagtgcccgccgcccgactgcgacgagagaaacaaaacc
aaggtgtgcggctcggatggggtgacctacgccgaccagtgccagctgaggaccatcgcc
tgcaggcaggacaaggacgtggcggtccaacactttggacagtgcacagaaaccatctct
gagccggcagaccgacccacccccaacccccccaccaccgccgccgccaccatcaccgcc
accaccccggccccattccacccaaacatggtggaggccctcccgcctccgaggacggag
gagacggagaccgccgggcggcccccggccaccacccgctcctccaaactcacgcacaac
cgagcgagctccgtccacaaccagcccgccggcaacgccgacccctctcgcggccgccac
gccccctccgccaccgccatcaggtccttcgagggctcgggcagcggggagccgagcggg
gacgagcagatcgaagaagaagaagagcaggaaggggaagaggaagcaggtagcggcatc
ccagcggaggccagtggggccgaggagcctgccgacaccacgctgatgagcaccgccgta
ccctcggccgaggtcaggtcgtcgtgtgacaacgaggagttcggctgctgccccgacggc
aggacggcgtccggcaccccggagggcgccaactgcccccccctccatgcctcggccagc
ttttgggacgagtctcggtctgccaccatgaagttcagcgggttcctgcacttggaccaa
gtcgagggccaggagatcttctacacccgcgagatggaggaccccaagtcggagctgttc
ggagagacggcgcgcagcatcgagagcgctctcaacgagttgttcaggaagtcggacgca
cacaaagacttcctgagcgtccgggtcctgaacctggcgcccagcaactccatcctggcc
ttcgtggaggccaacttcaagccagatacgagatacacggtggaggacatcaaggcagcg
ctgctgaagcagctgaaggcctccagagacaccagcatcgccgtgaagaagccggaggac
gagaacatccacttcaccaattatgtcgtctcctccatccccttattgaccaccaccacc
accacagtggcgtcggtcaccaccgccgcccccaccatcgccatgaccaccgccgcggct
gccgccactacgacctccaggcctccgccgacctccccgtacatcacccgccgcccgccg
ggcaccacccgcaggcctcacggcggcaggcgcaccaccaccaccaccagcaccaccacg
tccgcgccgatcaccacgccgctgccgaccaccaccgccgccgccaccaccatggcggcg
gcggtcaccacggccgtgccgcatccggcgaccaccggcgctcacgtcaggggccgcctc
caccaccacaagacgcagaagccctgcggctcccacccctgcctccacgggggaacctgc
gaggacgacggcaacgacttcagctgcatgtgccccgccggccgaggaggctccgtgtgc
gagaaggtgatccgatacttcatcccggcgttcgggggccagtcgtacttggcgttccag
accatgagcgcctaccacacggtccgcatcgccatggagttccgggcgtcggagatgagc
ggcctcctgctctacaacggccagacgggcaagaaggacttcatctccctggccctggtg
aacggcaaggtggagctcaggttcaacacgggctcgggcaccggcaccctggtcagcaaa
gtgccggtcactcggggccgctggcaccagctggtggtgacgcgcaaccggcgcaacgcc
aagctgagcgtggacaacgagccgcacatcgacggcgagagtccgcgcggcaccgacggc
ctcaacctcgacaccgacctgttcatcggcggggtgtccgaggacatgaagcaggatgtg
agggagcggacggcggtggccggcggcctcgtgggctgcatccgcctgctggacgtcaac
aaccggatgctcaacctgcaggagagcggcggcgacagcgtgtacggcagcggcgtcgga
gaatgcggcaacaacccctgccagcccaatccctgcaggaacgccgcggcgtgccaggtc
aaggaggcggagatgttccactgcaagtgcagcaaaggattctggggtccaacctgcgcc
gacctccatgacccgtgcgagcccaacaggtgccaccagtcctcccagtgccaggcgctg
cccgagggaggctacaagtgcgagtgtcccatggggcgtgaaggcaggcactgcgagaaa
gtggcggagaggcgaggggcttacatgccgctgttcaacggagactcttacctggagctg
aaggggctccacctctacgggcaagatctgcgccaaaaggtcagcatgacggtggtgctc
aaggccaacgactccaacggcttgatcttctacaacggccagaagacggacgggaaaggc
gacttcatctctctgtccctcaacgacggcgtcctggagttccgctacgacctggggaag
gggcccgccaccatcaggagtaaggaagcgatccagctgaacgtgtggatcaccgtcaac
ctggagcgctccaaccgcaaaggagagatcacggtgaacaagaaggacgccgtccgaggc
gaggcgccgaacctgcacgtggacctgaacctgaaagagtctctgtttgtgggcggagct
ccggactacagccgactggcgagggtggccgcgctcaccgacggcttcaaggggacgatc
caggagatcatcctgatgggtacccccatcctccgagaggagaacgccctgcgctccagc
gatgtggccatgttccaggaccacccgtgctcccggaagccgtgccacaacggcggccgc
tgcaggccctcgctggacgcctacgagtgcctctgcctcaacggcttccgaggggagcgc
tgtgagaacgccgtctacgagaaggccgccggagagaccgaggccatcgcctttgacggg
cggacgttcgttgagtaccacaacgcggtcacgaagagcgagaaggccctgctggtgaac
aagtttgagctgagcgtgcggaccgaggcgacccagggcctggtgctgtggagcgggaag
ggcgtggagcgctccgactacatcgccctggccatcgtggacggacgcgtccagatgacc
tacgacctgggctccaagcccgtggtgttgcgctcctcggtgcgcgtcgacaccaaccgc
tggatacgcatcaaggccagcagagcgctcagagacggctctctacaggtcggcaacgag
gcggccgtaacggggtcatcgcctttggcagcgacgcagctggacacggacggagccctg
tggttgggcggtctggaggagctggcggtggcccgccggttgcccaaggcctacagcacc
agcttcatcggctgcatcaaggacgtggtggtggacggcgtggagctccacctggtggag
gacgccttaaacagccccaacatattacactgctccgccgccaaataa
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