Pseudoliparis swirei (Mariana hadal snailfish): 130198990
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Entry
130198990 CDS
T09868
Symbol
plxnd1
Name
(RefSeq) plexin-D1
KO
K06822
plexin D
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09190 Not Included in Pathway or Brite
09193 Unclassified: signaling and cellular processes
99995 Signaling proteins
130198990 (plxnd1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plexin_cytopl
Plexin_RBD
TIG
Sema
PSI
TIG_plexin
PSI_PlexinA-B
YobH
Motif
Other DBs
NCBI-GeneID:
130198990
NCBI-ProteinID:
XP_056278111
LinkDB
All DBs
Position
9:complement(25377363..25439171)
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AA seq
1909 aa
AA seq
DB search
MPPPSIAAAVLLLLGALALETRRSASALRVQQAFASPNRTNNFAVDPVSRKVYLATVNTV
YQLNGTLSVEVEQRTGPVEDNLLCHAPQLPQAPCEHPKSLTDNHNKLLKLDRDQGIVLVC
GSVYQGFCELRKMGNVSEIAVEFPHQGEKTVFPSMLNIAANHPNASTVGLIFKSHGGRTR
LLVGATYTGAGTQFFPKNHSKEDLRFENTPEIAIRSLDVEDLSRLFTYDINPSEDNVFKI
KQDAKTKNKLNFVHAFMHKTYSYIAFNNDAKTGHKESRPNSVLARICLDTENPRKPSGPE
SRKLTESYIQMPLQCGSDGNIYSRLVSVFPAEIQAEDGGGGDGGGGGRGTAEPYLFGVFA
KVDRRAALCAFRFGDIDEKIRQGRRSCSNFPSGDVQVLDSVIQGSGAACIQKGNLVLQLE
QLDCGAAHLQHPLALRSSLRAAPLVEYPGLSSVSVDNVHNHTVVFLGTGNGRLRKLTLLP
NMTVASQGTLKLPASEAVHHVMTFDPNDGNFLYLMTSHHMLRVKVADCDQWRSCSDCLGA
GDAHCGWCTLENRCSVQEECSRALLARSWISLLAGAACCPSMTLTPSEVSVAGDVKDVGI
LINGSVPDLAGSRVECEYAPGVSTAATVHLDYGPAQIQTCPLLPRENYRPIPPGADHLTI
SVAIKVNGTTVVSGSFVVYDCKRTGAIHPKTPCVSCLSTRWKCYWDPDNHLCVASKDESK
HNLLENAVSCPALVASEVPPSPSEAVQDFILSLSNIQEGEELECDFGTARRYEATWLNSS
TVKCSGVTLSTNQRSQVYQLDLRRRGRFRGREEDVFVDSPRPMRVEVYNCGAGGSDCSQC
WGREDQGHLCGWCDNSCRPRDDCQPIRDQCPPPEILKMFPLRGPVEGGTLLTVQGRNLGR
RPGAVKVSIGDVACALLPELYTVSMELVCVTGRSDGERTELLRVEVEQSGTGTSRERYSY
LVPKLRSLQPTRGSRAGGTVVVIRGEHLDIGSQVSVKVNDTLDCTITGKTEDTIECTMPP
ALHAHTDSVAVCVEFENLPCQSAELSTAYTYEKNPTISFIHPKKSYLSGGRTITVTGQGF
DLVQSVTMEVLGIGEKRCAVASPFTITCPSPPSGRSQPTSVQFILNGLLYTGDRPAEDED
EDEDEPHKGHFPLEYVEDPQFFTANKEKLIKHHPGEPLTLIINKGPSSLELVPEEYSVMI
GSYPCNISFHNDQLFHCTVNGPLSAGDRELPVTVQVGYFRRTIAKVQLGGSELAIVVSIV
VCCVLLLLCTVALVIYCTKSRRAERYWQKTLLQMEEMESQIRDEIRKGFAELQTDMTDLT
KELNRSQGIPFLEYKQFVTRTFFPKMCSDYEKSLVQPTYENNGLGPRVLPETHPLLQDWK
VTNKATKPNVEEGITMFATLLNNKHFLVTFVHALEQQKDFAVRDRCSLASLLTIALHGKL
EYYTSIMKDLLVDLIDASASKNPKLMLRRTESVVEKMLTNWMSICMYSDLKETVGEPFFL
LLCAIKQQINKGSIDAITGKARYTLNEEWLLRENIEATPQNINVSFQCCGMDSLPVRVMN
TDTVCQVKEKILEAFYKNLPFSQWPRAEDVDLEWFDSGSNSKLLQDLDKSSVMEEGRKKL
NTVSHYQIPEGASLAMTMRDKRDNTLGRVKDLDTEKYVHLVLHHDDLSDHKRSHRPSHRK
KVLPEIYLTRLLSTKGTLQKFLDDLFQAIFSIPPDRPPLAIKYFFDFLEEQADKRGIHDP
DTLHIWKTNSLPLRFWVNILKNPQFVFDIEKTDHMDACLSVIAQAFIDACSVSDLQLGKD
SPTNKLLYAKEIPEYKKRVQSYYQQIQDMAPLSEQEMNAHLAEESRKYQNEFNTNLALSE
IYKYAKRYRSQVVVALEANPTARRTQLHHKFEQVIALVEDNIYECCSEA
NT seq
5730 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctccttccatagccgccgccgtgctgctcctcctcggcgccttggcgctggag
acgcgccggagcgccagcgcgctgcgcgtccaacaggcgttcgcgtctccaaaccggacc
aataacttcgcggtggacccggtgtcccggaaagtctacctggccaccgtgaacaccgtc
taccagctgaacggcaccctgagcgtcgaggtggagcagaggaccggcccggtggaggac
aacctgttgtgccacgcgccgcagctcccgcaggctccgtgcgagcatcccaaatccctc
acggacaaccacaacaagctgctgaagctggaccgggaccaggggatcgtgttggtgtgc
ggctccgtgtaccagggcttctgcgagctgcggaagatgggcaacgtctctgagatcgcg
gtggagttcccgcaccagggcgagaagacggtgttccccagcatgctcaacatcgccgcc
aaccacccgaacgcgtccacggtggggctcatcttcaagagccacgggggccgcacccgg
ctcctggtgggggccacgtacacgggggccggcacccagttcttccccaagaaccacagc
aaggaggacctgcgcttcgagaacaccccggagatcgccatccgctccctggacgtcgag
gacctctcgcggctgttcacctacgacatcaacccgtcggaggacaacgtgttcaagatc
aagcaggacgcgaagaccaagaacaagctgaacttcgtgcacgcgttcatgcacaagacc
tactcctacatcgcgttcaacaacgacgcgaagacgggccacaaggagagccggcccaac
agcgtgctggcgcgcatctgcctggacacggagaacccgcgcaagcccagcgggccggag
agccgcaagctcacggagtcctacatccagatgccgctgcagtgtggatccgacgggaac
atctacagccggctggtgtccgtgttccccgcggagatccaggcggaggacggcggagga
ggagatggaggaggaggagggcgcggcaccgcggagccctacctgttcggagtgttcgcc
aaggtggaccggagggccgcgctgtgcgccttcaggttcggggacatcgacgagaagatc
cggcagggccgccgcagctgctccaacttccccagcggcgacgtccaggtgctggacagc
gttatccagggctccggggcggcctgcatccagaagggcaacctggtgctgcagctcgag
cagctggactgcggcgcggcccacctgcagcaccctctggccctgcgcagctccctgagg
gccgcccctctggttgagtacccgggtctcagctcggtgtccgtggacaacgtgcacaac
cacacggtggtgttcctggggaccggcaacggacggctccgcaagctgaccctgctgccc
aacatgacggtggccagtcaggggacgctgaagctgcccgccagcgaggcggtccaccac
gtcatgacctttgaccccaacgacggcaacttcctttatctcatgacctctcaccacatg
ctcagggtgaaagtggcggactgtgaccagtggaggagctgcagcgactgcctgggagcc
ggcgacgcccactgtggctggtgcaccctggagaaccggtgctcggtgcaggaggagtgt
tctcgcgcgctgctcgctcgctcgtggatcagcctgttggccggcgccgcgtgctgcccc
tccatgacgctgacgccctcggaggtcagcgtcgccggcgacgtcaaggacgtcggcatc
ctgataaacggcagcgttcccgatctggccggctcccgggtggagtgcgaatacgctccg
ggtgtttcgacggccgccacggtgcacctggactacggccccgcccagatccagacctgc
cccctgctccctcgggaaaactaccggcccatcccccccggcgcggatcacctgaccatt
tccgtggcgataaaagtcaacggcacgaccgttgtatctgggagcttcgtcgtctacgac
tgcaagaggaccggagcgatacacccaaagaccccatgtgtgagctgcctgagcaccaga
tggaagtgctactgggatcccgacaaccacctctgtgtggccagtaaagacgagtccaag
cacaacctgctggagaatgccgtttcctgtcccgcgctggtggcctcagaggttcctccg
tcgccgtcggaagcggtgcaggacttcatcttgtccctcagcaacatccaggagggggag
gagcttgagtgcgacttcgggacggctcggcggtacgaggccacgtggctgaacagctcc
accgtgaagtgcagcggagtaaccctgtccaccaaccagaggagccaggtgtaccagctc
gacctgaggaggagaggacgcttcagggggcgggaggaggacgtcttcgtggacagccct
cggccaatgagagtggaggtgtacaactgcggagcgggcggctcggactgctcccagtgc
tggggccgcgaggaccagggccacctgtgcggctggtgtgacaacagctgcaggccgagg
gacgactgtcagccaatcagggatcagtgcccgccccccgagatcctcaagatgttcccc
ctgaggggtcccgtggaaggaggcaccctgctgacggtgcaaggcaggaacctgggcagg
aggcccggagccgtgaaggtgtccatcggagacgtggcgtgcgccctcctccctgagctc
tacaccgtctccatggagctggtgtgcgtcaccgggcgctccgacggcgagaggacggag
ctgctccgcgtggaggtggagcagagcggcacgggaacctccagggagagatactcctac
ctcgtcccgaagctgcggtcgctgcagccgacgaggggctcccgcgccggagggaccgtg
gtcgtcatcaggggtgagcacctggacatcggctcgcaggtcagcgtcaaggtcaacgac
acgctggactgtaccatcacaggtaaaacagaagacaccatcgagtgcaccatgcctcca
gccctgcatgcgcacacggactcggtggccgtgtgcgtggagtttgaaaaccttccctgt
caaagcgcggagctcagcaccgcctacacctatgagaagaaccccaccatcagcttcatc
caccccaagaagagctacctcagtggtggcaggaccatcacggtgacaggccagggcttt
gatctggtgcagagcgtcaccatggaggtgctgggaattggagaaaaacgctgcgcggtg
gcctcccccttcaccatcacctgcccatccccgccgtccggccggtcccagccgacctcg
gtgcagttcatcttgaacggactcctctacaccggggaccggcccgccgaggacgaggac
gaggacgaggacgagccgcataaaggtcacttcccgttggagtacgtggaggaccctcag
ttcttcaccgccaacaaggagaagctgattaagcaccacccgggggagccgctgacactc
atcatcaacaaagggccgagctccctggagctggtgccggaggaatactcggtgatgatt
ggctcctacccgtgcaacatcagcttccacaacgaccagctgttccactgcaccgtcaac
ggcccgctgagcgccggagacagagagctgcccgtcactgtgcaagtcggatactttcgc
cgcaccatcgccaaagtgcagctgggcggcagcgagctggccatcgtggtgtccatcgtg
gtgtgctgcgtgctgctgctgctgtgcactgtggccctcgtaatctactgcaccaagagc
cgaagggcggagcgctactggcagaaaacgcttctccagatggaggagatggagtcccag
atcagagacgagatccgtaaaggttttgcagagctgcagacggacatgaccgacctgacc
aaggagctgaaccgcagccagggcatccccttcctggagtacaagcagttcgtcacgcgc
accttcttccccaagatgtgttcggattacgagaagagtctggtgcagcccacctacgag
aacaacggcctgggcccccgagtgctgccggagacccacccgctgctgcaggactggaag
gtcaccaacaaggcgacgaagcccaacgtggaggagggcatcaccatgttcgccacgctc
ctcaacaacaagcacttcctggtcacgttcgtccacgccttggagcagcagaaggacttc
gcagtgcgagacagatgcagcctggcgtctctgctcaccatcgccctccacggtaagctg
gagtactacaccagcatcatgaaggacctgctggtggacctgatcgacgcctcggcctcc
aagaaccccaagctgatgctgcggcgcaccgagtccgtcgtggagaagatgctcaccaac
tggatgtccatctgcatgtacagcgacctcaaggaaacggtgggcgagcctttcttcctg
ctgctgtgtgcaatcaagcagcagatcaacaagggctccatcgacgccatcacggggaag
gcccgctacacgctcaacgaggagtggctgctgcgcgagaacatcgaggccacgccgcag
aacatcaacgtgtccttccagtgctgcggcatggactcgctgcccgtcagggtcatgaac
acggacacggtctgccaggtgaaggagaaaatcctggaggccttttataagaacctgccg
ttctcccagtggccccgagcggaggacgtggacctggagtggtttgactctggcagcaac
agtaagctgctgcaggacctggataagtcctcagtgatggaagagggcaggaagaaactc
aacactgtgtcccattaccagatcccagagggggcgtcgctggccatgaccatgagagac
aagagagacaacaccctggggagagttaaagatctggatacggagaagtatgtacacttg
gtcctgcatcacgacgacctctcggatcacaagaggtcgcacaggccgagccaccgcaag
aaggtgctgcccgagatctacctgacgcgcctgctgtccaccaagggaactcttcagaag
ttcttggatgacctctttcaagccatcttcagcatccctccggatcgcccccctctggcc
atcaagtacttctttgacttcctggaggagcaggcggacaagcggggcatccatgacccc
gacacgctgcacatctggaaaaccaacagcttgccgctgcgcttctgggtgaacatcctg
aagaatcctcagttcgtgttcgacatcgagaagacggaccacatggacgcctgtctgtcc
gtcatcgcccaggccttcatcgacgcctgctccgtgtccgacctgcagctgggcaaggac
tcccccaccaacaagctgctgtacgccaaggagatccccgagtacaagaagagggtgcag
agctactaccagcagatccaggacatggcgccgctcagcgagcaggagatgaacgctcac
ctggcggaggagtccagaaaataccaaaatgaattcaacaccaacttggccttgtcggag
atctacaagtacgccaagagatacaggagccaggtggtggtcgctctggaggccaacccc
acggcgcggcgcacccagctgcaccacaagttcgagcaggtcatcgccctcgtggaggac
aacatctacgagtgctgcagcgaggcctga
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integrated database retrieval system
