KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130200601
Entry
130200601         CDS       T09868                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1
  KO
K02084  apoptotic protease-activating factor
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04115  p53 signaling pathway
pswi04210  Apoptosis
pswi05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    130200601 (apaf1)
   04115 p53 signaling pathway
    130200601 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    130200601 (apaf1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st APAF1_C Beta-prop_EML_2 WD40_CDC20-Fz NB-ARC EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_CAF1B_HIR1 APAF-1-like_WHD Beta-prop_WDR90_POC16_2nd Beta-prop_EML ANAPC4_WD40 CARD WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_WDR35_TULP_N RMC1_N Beta-prop_SCAP Beta-prop_HPS5 Ge1_WD40 PEP5_VPS11_N CARD_2 WD40_like PROPPIN WD40_RFWD3 PQQ_2 Beta-prop_SPT8 AAA_16 DUF7099 AAA_22 nSTAND1 AAA_18 NACHT LRRCT_2
Other DBs
NCBI-GeneID: 130200601
NCBI-ProteinID: XP_056281002
LinkDB
Position
10:4102404..4135699
AA seq 1256 aa
MALEEGARSCLLRSRHRLEQDIKPSYLMDHMISDGVLTGDEEERIRTQATRKDQAVALLE
LLLRKDNRAYVSFYNALVKEAYNDLANLLHADLPRALPEAHARSSDCCTPLVQTVLSEGG
VPQRPVVFVSRPELVNHVREKLYRLQKEPGWITVFGMAGSGKSVLAAEAVRHHGLIEECF
PGGIHWLSIGQLDKPDLLVKIQSLCFRLEQSLDSQSLHRSPNTLDEAKERLRFLMLRRYP
RALLILDDIWDSSVLKAFDVQCRILLTTRNRSLTNSVSGAKYEVEVESGLDENKGMEILA
LYTKTKLHGLPEEARSIVRECKGSPLVVSLIGALLREKPDRWRYYLRQLQQKQFKRIRKS
SSYDYDALDQAMAASIEVLPDQHRELYKDLAVLENDIKVPAKVLSVLWELEPEEVEDILE
EFVNRSLLFVDRHNKPHLYYLHDLQLDFLVEQNRTQLESLHKKVVSQYQQHYRDGPPTSG
DEECLYWIRFLTYHMAKANLSQELYSLMFSLDWVSTKARLMGPAHLINDYVEYGPILDKE
SCEVRSQFQAFLSLSGHQLEQRPFPDVVQLALSQPHASEVYRQALLQARRRAGTGELYFD
WLNKSSVESLSRLVIHPHQGSVYSACFSQDGAKIASSGAGKTLKVFKSTTGEKLAEIQAH
DDDVLCCAFSPDDRLLATCSSDRKVKVWNVESAMLLRVFEEEHEEQVNHCQFTNTARRLL
LATCSNDNFLNVKLWNLNKPSSQNTMFGHFMPVNHCCFSPDDAYVSTSSNDGTVKLFQVA
SANEWKTISVRDAFAEESDEEVLVKCSTWTADGKRIVCAARNAALVFDVETSAMLLEIRT
NRLSTVQYCHACPTSNLLAIALSNYTVELWDLEANKKMADCSGHLSWVQRVQFSADGSQL
LSCSDDQTVRLWETKKVHTSSAVCLKRDSDVLFNDDAIVVSAADNCNRLQVRDGRTGSVL
FQSEEMSSRIRCTCLCTRPYAVALGQEDGTVQVLALPSGERLAVLPGHTRTVLHCRFSRS
GETLITSSEDATLRVWRWQSGECRVLQGHKEQVRRFSLLANDARLLSWSFDGTVMMWDTA
SGEKLQDVEAHRGAILSCDVSPDARLFATTSADKTAKLWRCDSWLCVHTLSGHQDCVRSC
RFSWDNRRLATGDDNGEIRLWSAEDGALLRICSREGRDGMDSLHGGWLTDLHFSPDDALL
VSTGGYVKWWDVGRGEALQTFFPMGTALKRIHVSADFSTFVTIDSIGILYILQRAL
NT seq 3771 nt   +upstreamnt  +downstreamnt
atggcgttggaggaaggggcgcggagctgtctgctgcgctctcgccaccggctggagcag
gacatcaagccctcctacctgatggaccacatgatcagtgacggcgtgctgactggggac
gaggaggagaggatcaggacccaggccaccaggaaggatcaggcggtggccctgctggag
ctgctgctcaggaaggacaaccgcgcctacgtctccttctacaatgcattggtcaaggag
gcgtacaatgatttggccaatctgctccatgccgacctgccccgcgcgttacctgaggcc
catgcgcgctcctctgattgctgcacacctctcgtccagacggtgctcagtgaaggcggc
gtcccgcagaggcccgtggtgtttgtcagcagaccggagctcgtgaaccacgtcagggag
aaactctaccggctgcagaaggagccgggctggatcaccgtcttcggcatggccggctcg
ggcaaatcggtgctggctgccgaggccgtcagacaccacggacttatcgaagagtgcttt
cccggcgggatccactggctgtccatcggccagctggacaaaccggacctgctggtgaag
atccagtcgctgtgtttccgcctggagcagagcctcgactcccagtccctccaccggagc
cccaacacgctggacgaggccaaggagcgcctgcgcttcctgatgctgcgcagataccca
agagctctgctgattctagatgacatctgggacagcagcgtgctgaaggcgttcgatgtc
caatgtcggatacttttgaccaccagaaacagaagcctcactaactctgttagtggcgca
aaatatgaggtggaagtggagagcggtctggatgaaaacaagggaatggagatcctcgct
ctgtacacgaaaaccaaactccacgggcttcccgaggaggctcgcagcatcgtcagagaa
tgcaaaggctccccgctggtggtgtccctgatcggcgctctgctcagggagaaacccgac
cgctggcgttactacctgcggcagttgcagcagaagcagttcaagcgcatcaggaagtcg
tcgtcctacgactacgacgccctcgaccaggccatggcggcgagcatcgaggtgctcccc
gaccaacaccgagagctctacaaggacctggcggtgctggagaatgacatcaaagtcccc
gccaaggtgctgtcggtcctgtgggagctggagccggaggaggtggaggacatcctcgag
gagtttgtcaacaggtctctgctcttcgtggaccgtcacaataagccccacctgtactac
ctccacgacctccagctggacttcctggtggagcagaatcgcacccagctcgagagcctc
cacaaaaaggtggtgagccagtaccagcagcactacagagatggcccccccacctctgga
gatgaggagtgtctctactggatcagatttctgacctaccacatggccaaagccaacctc
tcccaggagctctactcgctcatgttctctctggactgggtcagcaccaaggcccggctg
atgggcccggctcacctcatcaacgactatgtggagtacggacccatcctggacaaagag
agctgtgaggtgcggagtcagttccaggcgttcctctctctgagcggccaccagctggag
cagcggccgttccccgacgtggtgcagctcgctctgtctcagccgcacgcgtccgaggtc
taccggcaggccctgctgcaggcgcggcgccgcgccggcaccggggaactctacttcgac
tggctgaataagagcagcgtggagagtctgtcccgcctggtgatccacccccaccagggc
tccgtctactccgcctgcttctcccaggacggagccaagatcgcctccagtggcgccggc
aagacgctgaaggtgtttaagagcaccacgggcgagaagctggcggagatccaggcgcac
gatgacgacgtgctatgctgcgccttctcccccgacgaccgtctcctggcaacctgctcc
agcgacaggaaggtcaaggtgtggaacgtggagagcgccatgctgctccgggtgtttgag
gaggagcacgaggagcaggtcaaccactgtcagttcaccaacacggcgcggcgcctcctg
ctggccacctgctccaacgacaacttcctgaacgtcaagctatggaacctcaacaaaccg
tcctcccagaacaccatgttcggccacttcatgccggtcaaccactgctgtttctccccc
gacgacgcctacgtgtccacgtcctccaacgacggcaccgtgaagctctttcaggtggcg
tccgccaacgagtggaagacgatcagcgtgagggacgcgttcgcggaggagagcgacgag
gaggtgctcgtcaagtgcagcacctggaccgccgacggcaagcgcatcgtgtgcgcggcc
aggaacgccgctctggtgtttgacgtggagacgtcggcgatgttgttggagatcagaacg
aatcgcctgagcacggtgcaatactgccacgcctgcccgaccagtaacctgctggccatc
gcgctctcaaactacacggtggagctgtgggacttggaggccaataagaagatggcggac
tgcagcggtcacctgagttgggtgcagcgtgtccagttctctgccgacggctcacagctg
ctctcctgctctgacgaccagactgtcaggctatgggagacgaagaaggtgcacacctct
tcggccgtctgcctgaaaagagactcggacgtcctcttcaacgacgacgccatcgtggtg
tcggccgcagacaactgcaaccggctgcaggtccgtgatggccggacgggatcggtgctg
ttccagtcggaggagatgtcgtccaggatccggtgcacgtgtttgtgcacacggccctac
gctgtggccctgggccaggaagacggcaccgtgcaggtgttggcgctgccctccggggag
cggctcgccgtgctgccgggtcacaccaggacggttctgcactgccggttcagccggagc
ggggagaccctgatcacgtcctccgaggacgccaccttgagggtgtggaggtggcagagc
ggcgagtgccgagtgctgcagggccacaaggagcaggtccgacgcttctcgctgctcgcc
aacgacgccagactgctgtcctggtccttcgatggcaccgtcatgatgtgggacacggcg
agcggggagaagctgcaggacgtcgaggctcaccggggcgccatcctgtcctgtgacgtc
tcgccggacgctcgcctcttcgccaccacctccgcggacaagactgcaaagctgtggcgc
tgtgattcctggctgtgtgtccataccctgagcggccaccaggactgcgtgcggagctgc
cggttctcctgggacaaccggcgcctggcgacgggggacgacaacggagagattcggctc
tggagcgccgaggacggcgccctgctgaggatctgctcccgcgagggtcgggacggcatg
gactcgctccacgggggctggctgaccgacctgcacttctcccccgacgacgccctcctg
gtctccaccggcggctacgtcaagtggtgggacgtggggaggggcgaggccctgcagacc
ttcttcccgatgggcacggcgttgaagaggatccacgtctccgccgacttctccaccttc
gtcaccatcgacagcatcggtatcctctacatcctgcagagggcgctgtga

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