Pseudoliparis swirei (Mariana hadal snailfish): 130201334
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Entry
130201334 CDS
T09868
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3 isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04620
Toll-like receptor signaling pathway
pswi04621
NOD-like receptor signaling pathway
pswi04622
RIG-I-like receptor signaling pathway
pswi05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
130201334 (traf3)
04621 NOD-like receptor signaling pathway
130201334 (traf3)
04622 RIG-I-like receptor signaling pathway
130201334 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130201334 (traf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
zf-C3HC4
Sina_ZnF
zf-C3HC4_2
zf-TRAF_2
AAA_13
CCDC113_CCDC96_CC
zf-C3HC4_4
ATG16
RING_XB3-XBAT31
MctB
Baculo_PEP_C
ATG17_like
Synaptobrevin
Snapin_Pallidin
DUF724
DUF1664
Fez1
Fzo_mitofusin
GAS
Motif
Other DBs
NCBI-GeneID:
130201334
NCBI-ProteinID:
XP_056282259
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Position
11:complement(15088159..15106953)
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AA seq
595 aa
AA seq
DB search
MSAGRSADGREVQIPLQQVAPSLTTPLSVAPPIIPPSHRQVNPWPPNDSTASQGVPAGFV
PLHGGFRDHFLLTPEAKYCCEACSLVLCQPRQTECGHRFCQSCINDILSHPNPVCPADME
PLFKDKIFRDVCCHREIMALKVDCRSEANGCQEQMSLQQIPDHLNVCPFFEVPCPLGKCK
ERMMRKEIPDHLSWKCKHRESSCEFCMTKMPLTDLQKHKETVCPAFPVSCPNHCSFSSLP
RSELSSHQNDCPKAQVSCLFHRYGCTFKGLNLDMRQHESTLAAEHLRMMANRNSTLENKV
EDIKGELLERYKVLPALSSRLSELENQSDELREKNRQMEQKLATMQKLMSAHSEKLLEVE
LELRSLRVLRDEVENLRGTLENVRTRLNTLEQGGRSGTGSATHTLASLENQLKRHDEMLS
VHEIRLADMDLRFQVLETASYNGTLIWKIRDYKRRKQEAVGAKTLSLYSQPFYTGYFGYK
MCARVYLNGDGMGKGTHLSLFFVVMRGEYDALLPWPFKQKVTLMLMDQGPSRKHLGDAFK
PDPNSSSFRRPAAEMNIASGCPLFVSQTVLETGSYIKDDTIFIKVTVDTSDLPDP
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcggggaggagtgctgacgggagggaggtgcagattcccctccagcaggtggcg
ccctccctgaccacacctctctcagtggctccacccatcatcccaccctctcaccgtcaa
gtcaatccctggcctcccaacgactccactgcttcacaaggtgtccctgcaggcttcgtg
cctcttcatggaggattcagagaccacttcctgttgactccagaagccaaatactgctgc
gaggcctgcagcctggtcctgtgccaaccccgccaaaccgagtgtggacaccgcttttgt
cagagctgcatcaatgacatcctcagtcatcccaacccggtatgtccagctgacatggag
cctctgttcaaagataagatctttagagacgtttgctgccatcgtgagatcatggcactg
aaagttgactgtcgcagtgaagctaacggctgtcaggagcagatgagtctgcagcagata
cctgaccacctgaatgtgtgtccgttcttcgaggttccttgtccgttgggtaaatgtaaa
gagcgcatgatgaggaaggagattcctgatcacctgagctggaaatgtaaacacagagag
agcagctgcgagttctgcatgaccaagatgcccctaaccgacctgcagaaacacaaagag
acggtgtgcccagcgttcccagtgtcgtgtccaaaccactgctccttttcctcccttccc
cggagtgagctgtcgagccaccagaacgactgtcccaaagctcaggtgagctgtctgttc
caccgctacggctgcaccttcaagggtttgaaccttgacatgaggcaacatgagtccacc
ttggcagctgaacacctgagaatgatggccaacagaaactccacgttagagaacaaggtg
gaggatattaaaggtgagctgttggagagatataaggtgcttcctgctctcagcagtcga
ctgtctgagctggagaaccagagcgacgagctgagagagaagaaccgacagatggagcag
aaactggccactatgcagaaactaatgagcgctcactcagagaagcttctggaggtggag
ctggagctgcgttcccttcgtgtgctcagagatgaggttgagaacctgaggggaacgctg
gagaacgtccggaccagactgaacactctagaacaagggggacggagcgggacaggatcc
gcaacacacaccctggcatccctggagaatcagctgaagcgacatgacgagatgctgagt
gtacatgagatccgattagccgacatggacctgcgcttccaggtgcttgagacggcaagt
tacaatgggaccctgatctggaagatccgtgactacaagagaaggaaacaggaagcggtg
ggggcgaagacactgtcgctgtactcacagccattttacaccggatactttgggtacaag
atgtgcgcccgtgtctacctgaatggagacggcatgggcaaggggacgcacctgtctctg
ttctttgtggtgatgagaggcgagtacgacgccttgctgccctggcctttcaaacagaag
gtgactttgatgctgatggaccagggtccgtcgaggaagcacttgggggatgcctttaag
cccgatcccaacagtagcagcttcaggcgtcctgcagcagagatgaacatcgcttctggc
tgtcctctgtttgtttctcagaccgtcctggagactggcagctacatcaaagacgacacc
atcttcatcaaggttacagtcgatacctctgaccttcctgacccgtga
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