Pseudoliparis swirei (Mariana hadal snailfish): 130201623
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Entry
130201623 CDS
T09868
Symbol
c9orf72
Name
(RefSeq) guanine nucleotide exchange factor C9orf72 homolog isoform X1
KO
K23609
guanine nucleotide exchange protein C9orf72
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130201623 (c9orf72)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130201623 (c9orf72)
Membrane trafficking [BR:
pswi04131
]
Autophagy
Other autophagy associated proteins
Rab associated proteins
130201623 (c9orf72)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C9orf72-like
DUF7645
Motif
Other DBs
NCBI-GeneID:
130201623
NCBI-ProteinID:
XP_056282682
LinkDB
All DBs
Position
11:complement(10215700..10226603)
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AA seq
468 aa
AA seq
DB search
MSSGCPPQSPAVAKSEVAVEGECPLLAATFAYWDNILGPRVRHIWTPKGEQLMFLSDGEV
TFLANHTLNGEILRSAECGAVDVKFFVLAEKGVIIVSLIFDGELKGDKNTCALSIILPQT
ELAFYLPLHTICVDRLKHVIRKGRIWMKKGYNIISVLSLEIVPIMELLASMKSHSVPEDI
NIKDTVLNDDDIGDSCHEDFLHNCMLESMAISSHLQTCGCSIVVGSNPEKVNKIARTLCL
FLTPEERKCSRLCKADSSFKYDTGLFVQGLLKDSTGSFVLPFRQVLYSPYPTTHIDVDIN
TVKQMPPCHEHTYNQRRYMRSELSALWKADSEEDIAPDTVIHTDETFTPDLNIFQDVMHK
DTLVMSFIDEVFMLKPGLSLRSTYLAQFLLLLHRKALTLLKYIEDETQKGKKPFRTLRNL
KTDLDLTVEGDLNIVMAFAEKLRAGLHSFVFGKPFYTSVHERDALMTF
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctggctgtccaccccagtcgcctgccgtggcgaagtccgaggtggcagtggag
ggagaatgcccgctgctggcggccaccttcgcctactgggacaacatcctgggtccgcgg
gtgcgccacatctggacgccgaagggagagcagctgatgttcctcagcgacggcgaggtc
acgtttttggccaaccacacgctcaacggggagatcctgcgcagcgcagagtgcggcgcc
gtggacgtgaaattcttcgtgctggcggagaagggcgtcatcattgtgtcccttatcttc
gacggcgagctgaagggggacaagaacacgtgcgccttgtccatcatcctcccacagacg
gagctggccttctacctgcctctgcacaccatctgcgtggacaggctgaagcacgtcatc
cgcaagggacgcatttggatgaagaagggctacaacatcatctcagtgctgagcttggag
attgtccccatcatggagctgttggcctcgatgaagtcgcacagtgtgccagaagacata
aatataaaagacaccgtgctaaatgatgatgacatcggggacagctgccacgaggatttc
ctccacaactgcatgctcgagtcaatggccatcagctctcatctgcagacctgcggctgc
tcgatagtcgttggaagcaacccagagaaagtaaataagattgcgcggactctctgcctc
ttcctcaccccggaggagaggaagtgctcccgcctctgcaaggctgactcttctttcaaa
tacgacacgggcctgtttgttcagggtctgctcaaggactccacaggcagcttcgtcctg
cccttccgccaggtgctctactcgccgtacccgaccacgcacatcgacgtcgacatcaac
acggtcaagcagatgccgccgtgccacgagcacacgtacaaccagcgccgctacatgcgg
tccgagctgagcgccctgtggaaggcggacagcgaggaggacatcgcccccgacacggtc
atccacaccgacgagaccttcacgcccgacctgaatatatttcaagacgtcatgcacaaa
gacactttggtaatgtccttcatagatgaggtgttcatgctgaagcccggcctgtccctg
cggagcacctacctggcccagttcctgctgctgctgcacaggaaggccctcacgctgctc
aagtacatcgaggacgaaacgcaaaaggggaagaagccctttcgaacgctgcgcaacctg
aagacggacctggatctgacggtggagggggacctgaacatcgtcatggccttcgcggag
aagctgcgggcggggctgcactccttcgtgttcggcaagccgttctacaccagcgtgcac
gagcgagacgcgctcatgaccttctga
DBGET
integrated database retrieval system
