Pseudoliparis swirei (Mariana hadal snailfish): 130201662
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Entry
130201662 CDS
T09868
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04115
p53 signaling pathway
pswi04145
Phagosome
pswi04148
Efferocytosis
pswi04350
TGF-beta signaling pathway
pswi04510
Focal adhesion
pswi04512
ECM-receptor interaction
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130201662
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130201662
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
130201662
04148 Efferocytosis
130201662
09143 Cell growth and death
04115 p53 signaling pathway
130201662
09144 Cellular community - eukaryotes
04510 Focal adhesion
130201662
09142 Cell motility
04820 Cytoskeleton in muscle cells
130201662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130201662
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130201662
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Phagocytosis
Opsonins
130201662
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130201662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
EGF_CA
TSP1_ADAMTS
cEGF
Laminin_G_3
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
130201662
NCBI-ProteinID:
XP_056282725
LinkDB
All DBs
Position
11:14718169..14726779
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AA seq
1170 aa
AA seq
DB search
MMPCVIFLLLMLWSCEGARLAERRDDNSVFDLFDLARVNKRHNGVSLVKGADPYSPAYKV
LNADLIPALPETHLRDLLDSIQAERGFLLLVNLKQFKKTRGSILTIEKNDGSGPVFEIIS
NGKANTLDVVYSTMNQQQVVSIEDADLATGHWKNITLFVQDDRVQLFVGCEEINVSEMDL
PISKVLSQEVADIARLRIGKGAVRDKFMGVLQNVRFVFGTTLDAILRNKGCQTGATLTDV
MTLQNPVNGSSPAIRTDYNGHKAKDLPSVCGFSCEDIAGMFKELKGLGVVVKQLSTELRR
VSEDSTLLKRQMNIHSGICIHNGIVHKDKDEWTVDSCTECTCQNSATVCRKISCPLISCA
NATMPDGECCPRCERHYVEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQT
RDCYPQECDKRFKQDGGWSHWSPWSSCSVTCGEGDITRIRLCNSPTPQMGGMDCQGGGRQ
TEICQMSPCPINGGWGPWSPWDTCSVTCGGGVQTRKHLCSEPVPKYGGKDCVGDASVSQV
CSKQDCPIDGCLSSPCFRGARCSSFPDGSFRCGRCPLGFSGNGVACKDIDECKEVPDACH
THNGVHRCENTEPGYNCLPCPARFSGAQPFGRGVAQATAKKQVCKPRNPCQDGSHDCHRN
SNCIYLGVFSESMFRCECKPGYAGNGHICGEDSDLDGWPNTNLHCVENATYHCKKDNCPN
LPNSGQEDHDKDGLGDECDKDDDNDRIPDDRDNCPRVYNPAQYDSDRDDVGDSCDNCVFE
DNTDQTDTDNNGEGDACAVDIDGDGILNENDNCPYVYNVDQRDTDRDRVGDHCDNCPLEH
NPDQFDSDSDLIGDKCDNNQDIDEDGHQNNLDNCPYIPNANQVDHDKDGKGDACDHDDDN
DGIPDEKDNCRLAFNPDQLDSDGNGRGDVCKDDFDQDSILDIYDVCPENFDISETDFRRF
QMVPLDPTGTSQIDPNWVVRHQGKELVQTVNGDPGIAVGSDEFSAVDFSGTFFVNTDRDD
DYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNAL
WHTGDTAGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADTGNIFD
KTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgatgccgtgtgtcatctttttgctgttgatgctttggagctgtgaaggagcaagactg
gcagagaggcgggacgataacagcgtgtttgatttatttgatctggctcgggtaaacaag
agacacaacggagtgagcttggtcaaaggtgcagatccctacagccctgcatacaaggtg
ctcaacgcagacctgatccccgcactccccgaaacacacctcagggacctcctcgactcc
atccaggctgagaggggcttcctcctcctggtcaacctgaagcagttcaagaaaaccagg
ggcagcattttgaccatcgagaagaacgacggatccggacccgttttcgagatcatctcc
aacgggaaggcgaacactctggacgtggtctactccaccatgaaccagcagcaggtcgtg
tccatcgaggatgctgatttggccactggacactggaagaacatcacgctgttcgtccag
gatgaccgagtgcagctttttgtcggctgtgaggagatcaatgtttcagagatggatttg
ccaatctccaaagtgctgtcccaggaggtggcagacattgcccggctcaggattggaaag
ggagctgtaagagacaaattcatgggagtgcttcagaatgtgcgctttgtctttggcacc
acgcttgatgctatactaagaaataagggatgccagactggagccaccttaactgatgtc
atgaccctgcagaatccagtcaatggctccagcccggccattaggactgattacaacggc
cacaaagccaaagatctgccgtctgtttgcggtttctcttgcgaggacatcgccggcatg
tttaaggagctgaagggactcggcgttgtcgttaaacagctgtcgactgagctccgcaga
gtgtctgaggacagcacactgttgaaaaggcaaatgaacatccacagtggaatttgcatc
cacaacggcattgtgcacaaggacaaagatgaatggaccgtggatagctgcaccgagtgc
acctgccagaactctgctaccgtgtgtcgtaaaatctcctgccctctgatctcgtgtgct
aacgccaccatgccagatggagagtgctgccctcgctgtgaaagacactacgtagaggat
ggttggtccccctggtctgactggacccattgttcggtgacttgtggacggggcatccag
cagcgtggacgctcctgtgaccgcatcaacagcaactgtgagggcacctctgtccagacc
cgtgactgctacccccaggaatgtgacaaacgtttcaaacaggacggcggttggagccac
tggtctccctggtcatcgtgctctgtgacctgcggcgagggtgacatcacccggatacgc
ctctgcaactcccccacgccgcagatgggcggcatggactgccagggaggaggacgacaa
acggaaatctgccaaatgtcaccctgtcctatcaacggaggttggggaccgtggtcaccg
tgggacacctgctccgttacttgtgggggcggagtccaaacccgcaaacacctctgctcc
gaacctgtccccaaatatggaggaaaggattgcgttggtgatgcttctgtgtctcaagtg
tgcagcaaacaggactgccctattgacggttgtctgtccagcccatgcttccggggagca
aggtgcagcagcttccccgacggctctttcaggtgcggcaggtgtccactgggcttctct
gggaacggcgttgcctgcaaagacattgatgaatgtaaagaggtccccgacgcgtgccac
acacataacggagtccatcgctgcgagaacactgagcccggttacaactgtctgccctgc
cctgcacgtttctccggagctcaaccctttggaagaggagtggcgcaggcgactgctaag
aaacaggtttgcaaaccacgtaacccttgccaagatgggagccacgactgccataggaat
tcaaactgcatctacttgggcgtcttctccgagtccatgttccgctgcgagtgcaaacca
gggtatgctgggaatggccatatttgcggagaggacagtgacctggacggatggcccaac
actaacctgcattgtgtggagaacgccacctaccactgcaagaaggataactgccccaac
cttcccaactctggccaggaagatcatgacaaagatggcctgggtgatgaatgtgacaaa
gatgatgacaatgataggatccccgatgatagggataactgcccaagagtgtacaaccct
gcccagtatgactcggacagagatgacgttggcgacagctgcgacaactgtgtgttcgag
gacaacaccgaccaaacggacactgacaacaatggcgagggggatgcctgtgctgttgac
attgatggtgatggcattctgaacgagaacgacaactgcccttatgtttacaacgtggac
cagagagacaccgacagggacagggtgggagatcattgtgacaactgccccctggagcac
aaccccgatcagtttgactctgactcggatctcatcggagacaagtgcgacaacaaccag
gacattgacgaggacggccaccagaacaacttggacaactgcccctacatacccaacgcc
aaccaggtagaccacgacaaggatggcaagggtgacgcgtgcgaccatgacgacgacaac
gacggcattcccgatgagaaggacaactgcaggctggcgtttaacccagatcagctggac
tctgatggcaatggccgtggtgacgtgtgcaaagacgattttgaccaagacagtattctg
gatatctatgacgtgtgcccggagaactttgacatcagtgaaacagacttccgcagattc
caaatggttcccctggaccccacgggcacctcccagattgaccccaactgggtggtccgg
catcagggcaaggagttggtgcagactgtcaacggcgatcctggcattgctgttggttcc
gatgagttcagcgcggtggatttcagcggaacgttcttcgtcaacacggacagagatgac
gactacgctggtttcgtgtttggctaccagtccagctcacgcttctacacagtgatgtgg
aaacagatcacacagacctactggtcccacacacccacaagagctcagggctactcgggc
ctgtcaattaaagtggtcaactccaccactggacccggcgagcatttgaggaacgccctg
tggcacaccggagacaccgcaggacaggttcgcactctgtggcacgaccccaagaacatt
ggctggaaggacttcactgcctacagatggcatctgacccacagacccaagactggactg
atcagagtggtcatgtatgaaggcaagagaatcatggctgatactggaaacatctttgac
aagacgtacgctggcgggcggctaggcttgtacgtcttctctcaggagatggtttacttc
tcagatctcaaatacgaatgtagagatacataa
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