Pseudoliparis swirei (Mariana hadal snailfish): 130203429
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Entry
130203429 CDS
T09868
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pswi04040
]
130203429 (scn4aa)
Ion channels [BR:
pswi04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130203429 (scn4aa)
SSDB
Ortholog
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
Motif
Other DBs
NCBI-GeneID:
130203429
NCBI-ProteinID:
XP_056285560
LinkDB
All DBs
Position
13:9690367..9717151
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AA seq
1899 aa
AA seq
DB search
MAPLFPPRGAAAFRRFTQESLAEIERLKAESQKAAVEGRGGGEPEAPRADLEAGKGLPMI
YGDPPAALLNTPLEDLDPFYKAQHTFIVVTKGNTIFRFNAEPACYVLSPFSLVRRGAIKI
LIHSLFSLFIMITILANCVFMTMSNPPAWSKTVEYVFTGIYTVEATIKVLSRGFCFGSFT
FLRDPWNWLDFMVISMAYVTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVAALIQSV
KKMVDVMILTVFSLAVFALVGLQLFMGNLRQKCVRWPLETNEAAFEFFNATAMFNATASF
NSTAGFNDTTYSNSTFDFNEYIENTDNHYSLEGSLDALLCGNSSDAGKCPEGYTCMKAGR
NPNYGYTSFDSFGWAFLALFRLMTQDYWENVFQLILRAAGKTYMLFFVCIIFLGSFYLIN
LILAVVAMAYDEQNQATLREAREKEEEFQLQLEQLRNQEEAIGLGSQATLTSKKSLSHHT
IPEFTDDDCSLQHDEIIKDRNGRIIPRLLIKAPTMRESASEYELRDKSISSVHSMMHLEE
PGLKRRTASALTMATIAAMEELEDAQRPCPPAWYKFADMFLKWDCHPGWVFFKKWMLFVV
MDPFVDLGITICIVLNTLFMAMEHYPMTPEFEHMLSVGNLVFTGIFAAEMFLKLIAMDPY
YYFQVGWNIFDSIIVTLSLVELGLADVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGN
SVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKISLDCELPRWHMNDFFHSFLIVF
RILCGEWIETMWDCMEVAGVGMCLVVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSTGDD
DGEMNNLQIAVCRFTRGFDWLKAFVARTVLRILRKKPNEPGEGPEDDENPKMEEIEMNHM
DTGQSLKMSDGIGDCLVEGRPSGEFSLNVPIAQVESDFENLGEDDDADDADDDADDDADD
SEISDEKNNEENLEDESSMLRNVQLMGALNDGDSSVCSTMDYQPPEPEPEELEEEEPDPV
EPEACFTDECVKRWPCLTVDITQGKGKKWWNLRRACFTIVEHDWFETFIIFMILLSSGAL
AFEDIYLERRRTIKIILEYADKVFTYVFIIEMLLKWVAYGFKTYFTNAWCWLDFFIVDIS
LISLAANWMGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCL
IFWLIFSIMGVNLFAGKFYRCVNTTTGKLFPMTEVNNRSDCMAVKEATQEARWVNVKVNY
DNVGQGYLSLLQVSTFKGWMEIMYAAVDSREVGEQPSYEINLYMYIYFVIFIIFGSFFTL
NLFIGVIIDNFNQQKKKIFCFMLRLHGDKDLFMTEEQKKYYEAMKKLGSKKPQKPIPRPT
NLIQGVVFDLISQQFFDIFIMVLICLNMVTMMVETDNQSAEKDDFLFKVNVAFIAVFTGE
CTLKLFALRQYFFTNGWNVFDFIVVILSIAGTMLSDIIEKYFVSPTLFRVIRLARIGRIL
RLIKGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYIKKEGGIDDMFNF
ETFGGSIVCLFEITTSAGWDGLMLPMLNKDFPDCDPDFENPGTDVKGNCGNPLMSMAFFC
GYIIVSFLVVVNMYIAIILENFNVAQEESGDALCEEDFDMFNETWEKFDVDETQFIEYSR
LSDFCNTLQQPLRVAKPNRLRFIQMDLPLVIGDRIHCLDVLLAVTQMVLGDTVEMAAMRE
SIQAKFTLSNPTSDSFAPITTTVRHKEEQAAAVVVQRAYRKHLLKRCMRHAAFLRRRKTV
GRKEEGDGPPEKEGMLARRMGVLYGSKADLAEEMEKADLETLASQQPPNPETLSHDDTGA
RCGPEPPEVNIVAVPVEITSEVLLHSAPDPQAHLRETIV
NT seq
5700 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccctgttccctccccgaggcgccgcggcgttccgccgcttcacccaggaatcg
ctggcggagatcgagaggctcaaggcggaaagccagaaggcagcagtagagggccgcggg
gggggagagccagaggccccgcgcgctgacctggaggcggggaagggcctgccgatgatc
tacggagaccctccagcagcgctgctcaacacgccgctggaggacctggaccccttctac
aaagcacagcacacattcatcgtggtcactaaaggaaacacaatcttccggttcaacgcc
gagccggcctgctacgttctgagcccctttagtttggttcgaagaggagccatcaaaatt
ctcatacattcattattcagcctgttcatcatgattacgattctagcgaattgtgtgttc
atgacgatgagcaacccgccagcatggagtaaaaccgttgagtatgtttttactggtatc
tacaccgttgaggcgacgatcaaagtgttgtcgagaggtttctgttttggatcttttaca
ttccttcgagatccgtggaattggctggatttcatggtgatcagcatggcatacgtcact
gagtttgttgaccttggcaacgtgtcagctctcaggacatttcgtgtacttcgagccctt
aaaacaatcactgtgattcctggtttgaaaaccatcgtggccgctttgatccagtcagtg
aagaaaatggtggacgtcatgattctgaccgtcttctccctcgctgtcttcgccctcgtc
ggccttcagctctttatggggaatctgcggcagaaatgtgtgcgctggcccctcgagaca
aacgaggcagcctttgaattttttaacgccaccgccatgtttaacgccacggcgtccttt
aacagcaccgcgggcttcaatgacacgacatattccaacagcaccttcgatttcaatgag
tatattgaaaacacagataatcactattctttggaaggcagcctcgatgctctactttgt
ggaaacagctctgatgctgggaagtgcccagaaggatacacgtgcatgaaggctgggagg
aaccccaactatggctacaccagttttgactcttttggctgggccttcctggccctcttc
agactcatgacccaggactactgggagaacgttttccagctgatcctgcgggcggccggt
aagacctacatgctgttctttgtgtgtatcatcttcctgggctccttctacctcatcaac
ctcatcctggctgtggtagccatggcgtatgatgaacagaatcaggcaactctgcgagag
gccagagagaaagaggaagagttccagctgcaactcgagcaactcaggaatcaggaagag
gctataggtctcgggagccaagccactctaaccagtaagaagtcgctgagtcatcacacc
atacctgagtttacagacgatgactgcagccttcaacatgatgaaattatcaaggatcgt
aacgggagaatcattccccgtctgttaatcaaagcgcccaccatgagagagtctgcttca
gaatacgagctcagagacaaatcaataagctccgtgcacagcatgatgcacctggaggag
ccgggcctgaaacggaggactgccagtgctctgacgatggccactatagctgctatggaa
gagttggaggatgctcagaggccgtgcccacccgcctggtacaagtttgctgacatgttc
ctgaagtgggactgccacccgggatgggtgtttttcaaaaagtggatgctcttcgtggtg
atggacccctttgtcgacttgggcatcaccatctgcatcgtgctcaacaccctcttcatg
gccatggagcattaccccatgacccccgagtttgaacacatgctctccgtggggaatctg
gttttcactgggatcttcgcagcggagatgttcctcaagctgatcgccatggacccctac
tactactttcaagttggctggaacatcttcgacagcatcatcgtcactctcagtctggtg
gagttggggctggcggatgtccaagggctgtctgtcctcaggtccttccgtctgctccgt
gtcttcaaactggcaaagtcctggcccacgctcaacatgctgatcaagattattggcaac
tcggtaggcgctttaggaaacctgactttggtgctggccatcatcgtcttcatcttcgct
gtggtcggcatgcagctctttggcaagaactacaaagactgcgtgtgcaagatctcgttg
gattgcgagctgccgcgctggcacatgaacgacttcttccactcgttcctcatcgttttc
cgcatcttgtgcggcgagtggatcgagaccatgtgggactgcatggaggtggccggagtc
gggatgtgcttggttgtcttcatgatggtgatggtcattggaaatctagtggtgttgaac
ctcttcctggccttgctgctgagctcgttcagcggagacaacctctccacgggggacgat
gacggggagatgaacaatctccagatcgccgtctgcaggttcacacgaggcttcgactgg
ctcaaagcgttcgtcgctcgaaccgtcctgcgaattctcaggaagaagcccaacgagccc
ggtgagggcccggaggacgacgagaaccccaaaatggaggaaattgaaatgaaccacatg
gacaccggtcagagtctcaaaatgtcggatgggataggtgattgtttagttgaaggccgg
ccttctggagagttcagcctcaatgtgccaatcgctcaggttgagtcagactttgaaaac
ctaggcgaggatgatgatgctgatgatgctgatgatgatgctgatgatgatgctgatgac
tcagagatatcggatgagaaaaataatgaggaaaacttagaagatgaaagtagcatgctg
agaaatgttcaactgatgggtgctttgaatgatggggattcttcagtgtgtagcaccatg
gactatcagccacctgagcctgaaccagaagagctggaggaagaagagcccgaccccgtg
gagcccgaggcctgcttcaccgacgagtgtgtgaagcgctggccgtgtctgacggtggac
atcacccaaggcaaaggcaagaaatggtggaacctccgtagggcttgcttcacgattgtg
gagcacgactggtttgaaaccttcatcatctttatgatcctcctcagcagcggcgctctg
gcgtttgaagatatatacttagaaagacgccgaaccatcaaaattattctggagtatgct
gacaaagttttcacctacgtcttcatcatcgagatgctccttaaatgggtggcatacggc
ttcaagacctacttcaccaacgcctggtgctggttagactttttcattgtagatatttcc
ctgattagtttagctgccaattggatgggatactccgacctcgggccgatcaagtccctc
aggaccctcagggccctcaggcctcttcgggcgctgtcgagatttgaagggatgagggtg
gtggtgaacgctctcgttggagcgattccctcaatcttcaacgtgctgctggtgtgtctg
atcttctggctcatcttcagcatcatgggagttaacctgtttgccgggaagttttaccgc
tgcgtcaacaccaccacgggcaagctttttcccatgacggaggtcaacaacaggagcgac
tgcatggccgtcaaagaggccacgcaggaggcccgctgggtcaacgtcaaggtcaactat
gacaacgtgggacaaggttacctgtcactgcttcaagtgtcgacttttaaaggctggatg
gagatcatgtatgctgccgtcgactcaagagaggtcggggagcagccctcttacgagatc
aacctctacatgtacatctacttcgtcatcttcattatcttcggctctttcttcacactc
aacctcttcatcggtgtcattattgacaacttcaaccaacaaaagaaaaagatattttgt
tttatgttgcgtctgcacggagataaagacctcttcatgacggaggaacaaaagaagtac
tacgaggccatgaagaaactcggctccaagaagccacagaagccgattccacgtccaacg
aacctgatccagggagtggtgtttgacttgatcagtcagcagttctttgacatcttcatc
atggtgctcatctgcctcaacatggtgaccatgatggtggagacagacaaccaaagcgca
gagaaggacgatttcctcttcaaagtaaacgtcgctttcatcgccgttttcaccggcgag
tgcacgttgaagctcttcgccctgcggcaatacttcttcaccaatgggtggaacgttttc
gacttcattgtggtcatcttgtccattgctggtacgatgctctcggacatcatcgagaag
tactttgtgtcaccgactctgttcagagtgatccgactggccagaataggcaggatcctg
cgtcttatcaaaggagccaagggcattcggacgcttctcttcgctctcatgatgtcactt
cctgctctattcaacattggcctcctgctcttcctcattatgttcatcttctccatattt
ggcatgtcaaacttcgcctacatcaagaaggagggtggaatcgacgacatgtttaacttc
gagacgttcggcggcagcatcgtctgcttgtttgagatcacgacgtcggcgggctgggac
gggcttatgctcccgatgctgaacaaagactttccggactgcgatccggacttcgagaac
ccgggcacggacgtaaagggtaactgcggcaacccgctcatgagcatggcgttcttctgc
ggctacatcatcgtctccttcttggtggtggtcaacatgtacatcgccatcatcttggag
aacttcaacgtggcgcaggaggagagcggtgacgcgctctgcgaggaagactttgacatg
ttcaacgagacgtgggagaagttcgacgtcgacgaaactcagttcattgagtacagccgg
ctctcggatttctgtaacaccttgcagcagccgctgagggtagcgaagcccaatcggctc
cgctttattcaaatggatctgcccctggtcatcggggacaggatccactgcctggatgtc
ttgttggccgtcacacagatggtcctgggagacacggtggagatggcggcgatgcgcgag
agcatccaggccaagttcaccctgagcaaccccacctcggactcctttgcgccgattacc
acgacggtgcgccacaaagaagagcaggcggctgccgtcgtcgttcagagggcttaccgc
aagcacctgctgaagcgctgcatgcgccacgccgccttcctgcgccgccgtaagacggtg
ggcaggaaggaggaaggtgacggtccgccggagaaggagggcatgctcgcgcggaggatg
ggggtgctctacgggagcaaggcggacctcgccgaggaaatggagaaggcggatttagaa
actctagcaagccaacagccgccgaatcctgagacgctgtcgcatgatgacacaggggcc
cgatgtggtccagaaccccccgaggttaatatcgtggcggtgcctgtagaaatcacaagt
gaggtgttgttgcattctgcccccgacccacaggcacacctgagggagacgatcgtataa
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integrated database retrieval system
