Pseudoliparis swirei (Mariana hadal snailfish): 130205745
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Entry
130205745 CDS
T09868
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010
MAPK signaling pathway
pswi04137
Mitophagy - animal
pswi04141
Protein processing in endoplasmic reticulum
pswi04210
Apoptosis
pswi04217
Necroptosis
pswi04621
NOD-like receptor signaling pathway
pswi04622
RIG-I-like receptor signaling pathway
pswi04920
Adipocytokine signaling pathway
pswi05132
Salmonella infection
pswi05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
130205745
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
130205745
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
130205745
09143 Cell growth and death
04210 Apoptosis
130205745
04217 Necroptosis
130205745
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
130205745
04622 RIG-I-like receptor signaling pathway
130205745
09152 Endocrine system
04920 Adipocytokine signaling pathway
130205745
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130205745
09171 Infectious disease: bacterial
05132 Salmonella infection
130205745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pswi03019
]
130205745
04121 Ubiquitin system [BR:
pswi04121
]
130205745
Enzymes [BR:
pswi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130205745
Messenger RNA biogenesis [BR:
pswi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130205745
Ubiquitin system [BR:
pswi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
130205745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF2_zf
TRAF3_RING
zf-C3HC4
zf-C3HC4_2
zf-RING_6
zf-RING_4
zf-C3HC4_4
ATG16
Motif
Other DBs
NCBI-GeneID:
130205745
NCBI-ProteinID:
XP_056289223
LinkDB
All DBs
Position
15:complement(18946117..18957092)
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AA seq
605 aa
AA seq
DB search
MCDVPADAMATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHR
FCSYCFNRTVSNGPQKCSACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINENC
TWKGSIKEYELIHEGKCEFMIIPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHF
KNIKAHDEICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKI
HDHERAFAFEHLNLLLHYIMGMKVSMEVLQPQGPELSGHKLVELQQSLRELEARVSQLIT
TSSGPPVQGASAASSSSSSSSSSSGLPGSTASAPPPPAPALSVSTSFTPLPSSVGAVLEL
QLHGQKAKVAELGRRCTELEVKSVTFENVVCVLNREVERFATTMEAGSRQHKLDQDKIEA
LSNKVRQLERTVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAM
FSPAFYTSKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLD
QSNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIV
DLTGL
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgacgttccagcagacgccatggccacgcaggagccgtcccctccctcgtccatg
gagagcaacaagcccggcttccccaagaagatcctgggcaacaagctggaggacaagcac
ctgtgcaactgctgccacaacatcctccgacggccgtttcaggcgcagtgtggacaccgc
ttctgttcctactgcttcaacaggactgtgagtaatggacctcagaaatgcagcgcctgc
atcaaagaggatatctttgaggatccgacatcgattttgaaacaaggatgtgcttttccc
gacaacgccgtgcgacgggaagtcgaaaacctctcagctgtttgtatcaatgagaattgc
acttggaagggcagcattaaagagtacgagctgatccacgaggggaagtgcgagttcatg
atcatcccgtgtccctcctgcaaagaacggattcgcttcaacgaacaggagcgccacaac
gagcgggaatgccccgagaggacgctcaactgcaagtactgcaaggagccattccacttc
aagaacatcaaggcgcacgatgagatctgtcccaagtacccgatgatctgtgaaggctgt
gccaagaaaaaaatacccagagaaaagtacgtggaccacatcaagttctgcagcaaattc
agaactccgtgtcgatttcacgtcgtgggatgtgatatgtctgtggaaaaggaaaagatt
catgaccacgagcgcgcctttgccttcgagcacctcaatctgctgctgcactacattatg
ggcatgaaggtgagcatggaggtcctgcagccccagggaccggaactctccggacacaaa
ctggtggagctccagcagtccctcagggagctcgaggccagagtctcccagcttatcacc
acctcctctgggcctcccgtgcagggagcctccgccgcctcctcctcctcctcctcttca
tcctctagctccggtctccccggttcgaccgcttcggctcccccccccccggctcccgct
ctgtccgtgtccacctccttcacgcctctgcccagctcggtgggcgcggtgctggagctc
cagctccacggccagaaggccaaagtggcggagctgggtcgcaggtgcacggagctcgag
gtcaagtccgtcacgttcgagaacgtggtgtgcgtcctgaacagggaggtggagaggttt
gccaccaccatggaagccggcagccgccagcacaaactggaccaggacaagatcgaggcg
ctgagcaacaaggtgcggcagctggagcggacggtggggctgaaggacctcacggtggct
gagatggagggccggctgagggaaatgtccgccacgacctttgatggcgtcttcgtctgg
aggatctccgatttcgccaaaaagaggcaggatgccattgcgggtcgagccccggccatg
ttctcaccagccttctacaccagtaagtacggctacaagatgtgtctgcggatctacctg
aacggagacgggaccgggcgcggcagccacttgtccctgttctttgtggtgatgaggggg
ctgagtgacgctctgctcaagtggcctttcaaccagaaggtgaccctgatgctgctggac
cagagcaacagggagcacatcatcgacgcctttcgccccgacgtcacctcctcctccttc
cagcggccggtgagcgagatgaacatcgccagcggctgcccgctcttctgcccgctctcc
aagctcgacgccaagaactcgtacatccgcgacgacaccatcttcatcaaggccatcgtg
gacctcaccggcctctag
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