KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130205745
Entry
130205745         CDS       T09868                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04010  MAPK signaling pathway
pswi04137  Mitophagy - animal
pswi04141  Protein processing in endoplasmic reticulum
pswi04210  Apoptosis
pswi04217  Necroptosis
pswi04621  NOD-like receptor signaling pathway
pswi04622  RIG-I-like receptor signaling pathway
pswi04920  Adipocytokine signaling pathway
pswi05132  Salmonella infection
pswi05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    130205745
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    130205745
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    130205745
  09143 Cell growth and death
   04210 Apoptosis
    130205745
   04217 Necroptosis
    130205745
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    130205745
   04622 RIG-I-like receptor signaling pathway
    130205745
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    130205745
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    130205745
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    130205745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pswi03019]
    130205745
   04121 Ubiquitin system [BR:pswi04121]
    130205745
Enzymes [BR:pswi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     130205745
Messenger RNA biogenesis [BR:pswi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     130205745
Ubiquitin system [BR:pswi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    130205745
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd zf-TRAF TRAF2_zf TRAF3_RING zf-C3HC4 zf-C3HC4_2 zf-RING_6 zf-RING_4 zf-C3HC4_4 ATG16
Other DBs
NCBI-GeneID: 130205745
NCBI-ProteinID: XP_056289223
LinkDB
Position
15:complement(18946117..18957092)
AA seq 605 aa
MCDVPADAMATQEPSPPSSMESNKPGFPKKILGNKLEDKHLCNCCHNILRRPFQAQCGHR
FCSYCFNRTVSNGPQKCSACIKEDIFEDPTSILKQGCAFPDNAVRREVENLSAVCINENC
TWKGSIKEYELIHEGKCEFMIIPCPSCKERIRFNEQERHNERECPERTLNCKYCKEPFHF
KNIKAHDEICPKYPMICEGCAKKKIPREKYVDHIKFCSKFRTPCRFHVVGCDMSVEKEKI
HDHERAFAFEHLNLLLHYIMGMKVSMEVLQPQGPELSGHKLVELQQSLRELEARVSQLIT
TSSGPPVQGASAASSSSSSSSSSSGLPGSTASAPPPPAPALSVSTSFTPLPSSVGAVLEL
QLHGQKAKVAELGRRCTELEVKSVTFENVVCVLNREVERFATTMEAGSRQHKLDQDKIEA
LSNKVRQLERTVGLKDLTVAEMEGRLREMSATTFDGVFVWRISDFAKKRQDAIAGRAPAM
FSPAFYTSKYGYKMCLRIYLNGDGTGRGSHLSLFFVVMRGLSDALLKWPFNQKVTLMLLD
QSNREHIIDAFRPDVTSSSFQRPVSEMNIASGCPLFCPLSKLDAKNSYIRDDTIFIKAIV
DLTGL
NT seq 1818 nt   +upstreamnt  +downstreamnt
atgtgtgacgttccagcagacgccatggccacgcaggagccgtcccctccctcgtccatg
gagagcaacaagcccggcttccccaagaagatcctgggcaacaagctggaggacaagcac
ctgtgcaactgctgccacaacatcctccgacggccgtttcaggcgcagtgtggacaccgc
ttctgttcctactgcttcaacaggactgtgagtaatggacctcagaaatgcagcgcctgc
atcaaagaggatatctttgaggatccgacatcgattttgaaacaaggatgtgcttttccc
gacaacgccgtgcgacgggaagtcgaaaacctctcagctgtttgtatcaatgagaattgc
acttggaagggcagcattaaagagtacgagctgatccacgaggggaagtgcgagttcatg
atcatcccgtgtccctcctgcaaagaacggattcgcttcaacgaacaggagcgccacaac
gagcgggaatgccccgagaggacgctcaactgcaagtactgcaaggagccattccacttc
aagaacatcaaggcgcacgatgagatctgtcccaagtacccgatgatctgtgaaggctgt
gccaagaaaaaaatacccagagaaaagtacgtggaccacatcaagttctgcagcaaattc
agaactccgtgtcgatttcacgtcgtgggatgtgatatgtctgtggaaaaggaaaagatt
catgaccacgagcgcgcctttgccttcgagcacctcaatctgctgctgcactacattatg
ggcatgaaggtgagcatggaggtcctgcagccccagggaccggaactctccggacacaaa
ctggtggagctccagcagtccctcagggagctcgaggccagagtctcccagcttatcacc
acctcctctgggcctcccgtgcagggagcctccgccgcctcctcctcctcctcctcttca
tcctctagctccggtctccccggttcgaccgcttcggctcccccccccccggctcccgct
ctgtccgtgtccacctccttcacgcctctgcccagctcggtgggcgcggtgctggagctc
cagctccacggccagaaggccaaagtggcggagctgggtcgcaggtgcacggagctcgag
gtcaagtccgtcacgttcgagaacgtggtgtgcgtcctgaacagggaggtggagaggttt
gccaccaccatggaagccggcagccgccagcacaaactggaccaggacaagatcgaggcg
ctgagcaacaaggtgcggcagctggagcggacggtggggctgaaggacctcacggtggct
gagatggagggccggctgagggaaatgtccgccacgacctttgatggcgtcttcgtctgg
aggatctccgatttcgccaaaaagaggcaggatgccattgcgggtcgagccccggccatg
ttctcaccagccttctacaccagtaagtacggctacaagatgtgtctgcggatctacctg
aacggagacgggaccgggcgcggcagccacttgtccctgttctttgtggtgatgaggggg
ctgagtgacgctctgctcaagtggcctttcaaccagaaggtgaccctgatgctgctggac
cagagcaacagggagcacatcatcgacgcctttcgccccgacgtcacctcctcctccttc
cagcggccggtgagcgagatgaacatcgccagcggctgcccgctcttctgcccgctctcc
aagctcgacgccaagaactcgtacatccgcgacgacaccatcttcatcaaggccatcgtg
gacctcaccggcctctag

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