Pseudoliparis swirei (Mariana hadal snailfish): 130206999
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Entry
130206999 CDS
T09868
Symbol
slit1a
Name
(RefSeq) slit homolog 1a isoform X1
KO
K06838
slit 1
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
130206999 (slit1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130206999 (slit1a)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Axon guidance molecules
130206999 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
hEGF
LRRNT
Laminin_G_1
LRRCT
LRR_1
LRR_9
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
EGF_3
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
130206999
NCBI-ProteinID:
XP_056291322
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All DBs
Position
17:12937630..13025101
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AA seq
1548 aa
AA seq
DB search
MPVRGSCCGAGMGRLAGQPLWMWVVMLSALLMGNVSACPALCTCSGTTVDCHGLGLKTMP
RNIPRNTERLELNGNNLTRITKSDFAGLKYIRVLQLMENQITVIERGAFDDMKEMERLRL
NRNQLQQFPELLFQKNPALSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCIEDGS
FRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCNLAWLAQWLRQRPTI
GLFTQCTGPSELKGLNVAEVQKHEFSCSGHQESSSFQPCNIGVGSCPAMCTCSNNIVDCR
GKGLTAIPANLPDTMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNHISEIAPDAFQGL
RSLNSLVLYGNKITDLPEGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNK
IQTLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRANPIETSGARCASPRRLANKR
IGQIKSKKFRCSAKEQYFIPGTEDTHLNNVCNSDPVCPPKCRCESNVVDCSNLKLTKIPE
HIPTSTSELRLNNNDITALEATGVFKSLSELKKINLSNNKITEIEDGSFEGASTVNELHL
TANHIDSVRSGMFRGLEGLRMLMLRNNKISCIHNDSFTGLHNVRLLSLYDNQLTTITPGA
FDTLQTLSTLNLLANSFNCDCRLGWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPD
FRCEEGQEEPSSCVPRPQCPSECTCLETVMRCSNKHLHTLPKGIPRNVTELYLDGNQFTV
VPKELSTFKHLQLVDLSNNKITSLTNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLR
LLSLHGNEISELPDGIFTDVASLSHLAIGANPLHCDCRLRWLSDWVKTSYKEPGIARCAG
PPGMEGKLLLTTPAKKFECIGDVDMTVLAKCNPCLSSPCLNHGICHSDTMEIYRCSCPPG
FKGKNCETALDACVSNPCANGGTCQVKEEEGQYSCSCPLGFEGPTCQTNIDECEGDDCEN
GATCVDGVNNYTCLCPPYYTGELCEEMEDVCAPGRSPCQHQSTCLITSTGPKCVCSPGYV
GDDCSVDYNDCEEHRCQSGAQCVDELNGYSCDCPKGYNGQLCEVLPSPLSLCELADCQNN
APCVERGGRALCQCPPEFGGPSCEKLVSVNFIDRDSYLLLSDLKNWPQANITLQVSTAED
NGILLYNGDNDHIAVELYQGHVKVSYDTGSQPGHSIYSSETINDGQFHTVELVTFDQMVN
LSIDGGLPTTMDSFAVVRPHNGEAPLYVGGRGPLQNTPPSSAGMPVDVHSGAFRLWQLQN
GSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKIYCVHGICQPDGFRGPVCHCQP
GWSGPRCDEIAPNPCQGSKCVHGKCIPLDSQSYRCECAEGFRGALCNQQGELFNPCRRLS
CKHGRCQISDSGDAFCHCESGYTGDLCDAESECRGEPVRDFYQVQRGYAICQTTRMVSWV
ECSGVCDTGACCASQRMKRRKYTFECSDGTSFSEQVEKTIKCGCKGCM
NT seq
4647 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtcagaggtagctgttgtggggcaggcatgggcaggctggctgggcagccgctc
tggatgtgggtggtgatgctctctgcgctgctcatgggcaatgtcagtgcctgtccagcc
ctgtgtacctgcagcggcaccacagtagactgccatggactgggtctcaaaaccatgcca
aggaatatcccccgcaatactgaaagactggagctgaatgggaataacctcacacgcatc
accaagagtgacttcgctggactcaagtacatccgagttttgcagctgatggagaatcag
attactgtgatcgagcgtggggcttttgacgacatgaaggagatggagagactgcggctg
aaccgtaatcaactgcagcagtttcctgagttgctgtttcagaagaaccctgccctctct
cgactagatctgagcgagaacttcatccagtccattcccagaaaagccttcagaggagct
acggacatcaaaaaccttcagctggataaaaaccacatcagctgcatcgaggatggatcc
ttcagagctctgagaggcttggaagtgctaacgctgaacaacaacaacatcagcagcatc
cccgtctccagcttcaaccacatgcccaagctacggaccttccgtctccactccaacaat
ctgaactgtgactgtaacctagcctggttggcccagtggctcagacagaggcctacaatt
ggtctattcacccagtgtactggcccttctgagctcaaaggactcaatgtggcagaggta
cagaaacacgaattcagctgctcaggtcaccaggaatcctccagctttcagccatgcaac
attggcgtgggctcgtgccctgccatgtgcacctgcagcaacaacatcgtggactgcaga
gggaaaggtctcactgccatcccagccaacctacccgacaccatggctgagatacgtctg
gagcagaatgggattaagtctgttcctcctggagccttttctccctacaagaaactgcgt
aggatagacctgagcaacaaccacatctcagagatcgctcctgatgccttccagggtctg
cgctccctcaactccctcgtgctgtatggaaataagatcactgacctacccgagggggtg
tttgacggcctctacgccctgcaactgctgttgctgaatgccaataagattcactgtgtt
cgtgcaaacgccttccaggacctgcagaatctctcactgctatcgctctacgacaacaag
atccaaaccctcgccaagggcacctttacttccctacgagctatccagacccttcacctg
gcccagaacccatttatttgtgactgtaatctgaagtggctggcagactacctgcgcgcc
aaccccatcgagaccagcggcgcccgctgtgccagccctcgccgactcgcaaacaaacgc
attggacagatcaagagcaagaagttccgctgctccgccaaagagcagtacttcatccca
ggcacagaggacacccatctgaataatgtctgtaacagtgatccagtgtgtcctcctaaa
tgccgctgtgagtcaaatgttgtggactgctccaacctgaagctgaccaagatccctgag
cacatccccacatccaccagtgaactccgccttaacaacaatgacatcactgctttggag
gcaactggagttttcaagagtctttccgaactgaagaaaattaaccttagcaacaacaag
atcacagagattgaggatgggtcatttgaaggcgcatcgaccgtcaacgagcttcacctc
acggccaatcacatcgactcggtccgaagtgggatgttccgtggcctagagggcctgcgt
atgctgatgctgagaaacaataagatcagttgcatccacaacgacagtttcaccgggctg
cacaatgttcgcctgctgtctctgtacgacaaccagctgaccacaatcactcccggagcc
ttcgacactctgcagacactctccacccttaacctcttggccaactccttcaactgtgac
tgccggctgggctggcttggcgattggctgaggagtaggaagatcgtgaccggtaaccct
cgctgccagcgtcccgccttcctgaaggagattcctctgcaggatgtggccctgcctgac
ttccgctgtgaggagggccaagaggaaccgtcaagctgtgtgcccagaccccagtgtccc
agtgagtgcacctgcctcgagactgtgatgcgctgtagtaacaagcacctccacacactg
cccaaaggcattcccagaaacgtgactgaactgtatctggatggaaaccagttcactgtt
gtgccaaaggaactatccaccttcaaacacctgcagctggtagacctgagcaacaacaag
atcacctctctgaccaactcgtccttcgctaacatgagccaactcacaactctaatcctg
agctacaactccctgcgttgtatccccaaaatggccttcagtggactgcactctctccga
ctgctgtctctccatggcaacgaaatctcagagcttcctgatggcatcttcaccgatgtg
gcctcactgtcccacttggcaattggtgccaaccccttgcactgtgactgtcgcctccgc
tggttatctgactgggtgaagaccagctacaaagagcccggcatcgcccgttgtgctggc
ccaccgggcatggagggcaaattgctgctcaccacacctgctaagaagtttgaatgtata
ggtgatgtggacatgaccgtgctggccaagtgtaacccctgtctgtccagtccctgtctg
aaccacggcatttgtcacagcgacacaatggagatctacaggtgcagctgtcctccagga
ttcaagggcaagaactgtgagacagctctggatgcctgtgtgagtaacccatgtgccaat
ggaggaacctgccaagtgaaggaggaggaggggcaatacagttgctcatgtcctctgggc
tttgagggccccacttgccaaaccaacattgacgaatgtgagggcgacgactgtgagaac
ggtgcaacctgcgtcgatggagtcaacaactacacttgtttgtgtcccccctactacacg
ggggagctgtgcgaagaaatggaggatgtgtgcgccccaggacggagcccctgccaacat
cagtctacctgcctcatcacctccaccggccccaagtgtgtgtgctctcctggttatgtt
ggtgacgactgcagtgtagactacaatgactgtgaggagcatcgctgtcagagtggagct
cagtgtgtggacgagctgaacggatactcctgcgactgtcctaaaggatacaatggtcag
ttgtgtgaggttctcccatctccactgtccttatgtgagctggccgactgccagaacaac
gcaccgtgtgtggagcgaggcgggcgggccctctgccagtgtccgccggagttcgggggt
ccaagctgcgagaagctggtcagcgtcaacttcattgacagagactcctacctactgctc
tctgacctcaagaactggccacaggccaacatcaccttgcaggtgtccacagctgaggat
aatggcatcctgctgtacaatggcgacaacgatcatattgcagtggagctctaccaaggt
catgtcaaggtcagctatgacaccggcagccagccaggacatagcatctacagttctgag
actattaacgatggccagttccacactgtggagcttgtgacctttgaccagatggtgaac
ctgtccattgacggaggtctacctacaacaatggacagctttgcggtggtgcggccccac
aacggggaggctccactatacgtggggggtaggggccctctccagaacacacctccctcc
tctgcaggcatgccagtggatgtccactccggcgctttccgtctctggcagctccagaac
ggttccagtttccatggctgtatccagaacctatacatcaacaatgagctccaggacttc
accaagacacagatgaagcctggcgtggtgccgggctgcgagccctgcaagaagatctac
tgtgtccatggcatatgccagcctgatggcttccggggaccagtgtgccactgccagccc
ggctggagcgggccccgctgtgacgagatagcgcccaacccctgccagggcagcaagtgt
gtccatgggaagtgcatccctctggactctcagtcgtatcgctgcgagtgtgcggagggt
ttccgcggtgccctgtgcaaccagcagggggagctgttcaacccctgccgccgcctgtcc
tgcaaacacggtcgctgtcagatctcagactcaggagacgccttctgtcactgtgaaagt
ggctacactggggacctctgtgacgcagagtctgaatgccgaggggaacctgtgcgagac
ttctaccaggtacagagaggttacgccatctgccagacaacacgcatggtttcttgggta
gagtgctctggagtctgcgatacaggggcctgctgcgccagccagcggatgaaacgccgg
aaatacacctttgaatgcagcgatggaacatccttcagcgagcaagtagagaagaccatc
aagtgcggctgtaagggctgcatgtag
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integrated database retrieval system
