Pseudoliparis swirei (Mariana hadal snailfish): 130209877
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Entry
130209877 CDS
T09868
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pswi04515
]
130209877
Cell adhesion molecules [BR:
pswi04515
]
Cadherins
Protocadherins
130209877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
130209877
NCBI-ProteinID:
XP_056295752
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Position
19:14832697..15035515
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AA seq
1003 aa
AA seq
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MTKTMGSRGWRWLLLWWHHFFLLWSTINGQTRYSIPEELKQGSVVGNLAKDLGLGLSDIF
DRKLRVDSEAGKQYFSVDAGKGELVVNDRIDRETLCAQSASCVLPLQVVTENPLQLHRIE
VEIRDINDNSPIFSTEERSLKIAESTATGTRFPLEAAQDLDVGSNSVKSYMLSRDDCFGL
RIKELSGNRKVPELVIVKSLDREKQSVHQLLLTALDGGNPLKTGSTKIIVTVLDNNDNVP
VFKRSLYNVTVHENNVAGSLLVKVEATDADEGVNGEIEYVFAEHTPQSLFSIFQLDSGTG
DISLVGQLDYESSPMHEIDITAKDKGLPAMEGHCRVQVIVIDMNDNAPEIILTSKPNTLR
EDAPRGTVVALIRARDLDSGDNAKVTLKLPKGSPFSLKPSFSNNYALVTSGVLDRESFSE
YNIEITATDSGSPPLSSKKTITVSITDVNDNPPVFTQPSYNVYLKENGVPGSILYSVSAS
DLDFGENAKISYSILDSKVQDVSVSSYVYINSDNGSIYSMHSFDYEKLKVFQIQVQAKDQ
GSPSLSSNATVHVFILDQNDNAPAVIYPSSAALGSLSHQRMPRSAKAGHLVTKLTAVDAD
SGHNAWISYKLTEATDASLFTVNLYTGEVRTKRAASEQDESSQRLLIEIKDDGEPVQSAT
VTVSILLEDGLQEPILDLRQKVSEPSKKTGRITLCLILSLASVSVLSLVTFLILAVKCMR
SSRSSDSCCMTRSDCDTYKNPNRNLQLQLNTDGPIKYVEVPGGDMMSQSQSFRSCMSPMS
EYSDFTLIKPSSTTDFNEVISVLDASLPDSTWTFESQQQKPPNNDWRVTQGPRPGPSGPH
MPYGTHIRWTPKSGTSATGGPEVAMGTGPWPQPPTEAEQLQALMAAANGEATATLGPGTM
GLSTRYSPQFTLQHVPDYRQNVYIPGSTATLTSNPQQQQATAQQAAQQAAQQAAQQQAAQ
QQAAQQQAAQQALPPAQVLVQPEPPKAAQTPASKKKSTKKEKK
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacaatgggatcccgaggctggagatggcttctgctttggtggcatcatttt
tttctcttgtggagtacaataaacggacagactcgttacagcatcccggaggaactgaaa
cagggctctgtggtaggaaatctagcaaaggatctgggtttgggactatcggacattttt
gaccgtaaactgcgtgtcgactctgaggctggtaagcagtacttcagcgtggacgcgggg
aagggcgagctggtggtgaacgacagaatagacagagagactctatgcgcacaaagcgcc
agctgtgtgctgcctttacaggtcgtaacagagaatccgctacagctacaccgcatcgaa
gtggagataagagacataaatgacaattctcccattttttcaacagaggagcgatcttta
aagatagcagaatctactgccacgggcacacgcttccctttagaagccgcacaggatcta
gacgtcggtagtaattcagtaaaatcgtacatgctaagcagagatgattgctttggttta
aggattaaagagttgtctgggaatcgaaaagttccggaactagtcatagtaaaatcgctt
gatagagagaaacaaagtgtccatcagttattactgacagctttagacggaggcaatcct
ttgaaaaccggaagcacaaaaatcatagtgactgtcctcgacaacaacgacaatgtccct
gttttcaaaagatcgttgtataatgtgactgtgcatgaaaataatgtcgctggttcgtta
cttgtaaaagtggaagcaacggacgcggacgagggtgttaacggggagattgaatacgta
tttgcagagcacacgccccaatcactgttttctatctttcagttggattcaggtacaggt
gacatttccttggtaggtcagttagattatgagagcagtccaatgcatgaaatagatata
actgcaaaagacaaaggcctccctgcgatggagggccactgtcgtgtacaagtaatagta
atagacatgaatgataatgctccggaaataattctcacgtcaaagccaaacacattacgc
gaggacgcaccaagaggcacagtggtggctttaatcagagcacgagaccttgactccggt
gataacgcaaaagtgacgttaaaactccccaaaggttctcctttcagtttgaaaccatca
ttttctaataattatgcactcgtaaccagtggcgtactagaccgagagagtttctcagag
tataatattgagataacagccactgattcaggctctcctcctctgtcgagtaagaaaacg
ataactgtcagcatcactgatgtgaatgacaacccccctgtattcactcagccctcctat
aatgtgtatttaaaagagaacggggtaccaggctctatactgtactcagtttcagcatcg
gacctggactttggtgaaaacgccaaaatctcttactccatcctggactctaaagtgcag
gacgtgtctgtctcctcgtatgtttacattaactcagataacggcagcatctacagcatg
cactcgtttgactatgagaaactgaaggtgtttcagattcaggtccaggcaaaggatcag
ggctctccgtccctcagcagcaacgccactgtccatgttttcatcctggaccagaacgac
aacgcccccgctgttatttacccctcctccgctgccctgggctccctctcccatcagagg
atgccccgctccgctaaagcgggacacctggtcactaagctgacggccgtggacgctgac
tcgggccataacgcctggatctcctacaaactaacggaggccaccgacgcctctctgttc
acggtcaatctgtacacaggggaggtgaggactaagcgcgctgcgtccgagcaggacgag
tcctctcagaggctgctcatagagatcaaggacgacggggaaccggtccagtccgccacc
gtcacggtgtccatcctgctggaggacggcctccaggagcccatcttagacctccgacag
aaagtgtccgagcccagtaagaaaactgggagaatcactctgtgtttgattctctctctg
gcctcggtgtccgtgctctcgctggtgacgtttctcatcttagcggttaaatgtatgagg
agcagcagaagcagcgacagttgctgcatgacacggagcgactgtgatacttacaagaac
cccaacagaaacctgcagcttcagctcaacactgatgggccgataaagtacgtggaggtc
ccgggaggagacatgatgtctcagagtcagtccttcaggtcctgtatgtctccgatgtca
gagtacagcgatttcactttgattaaaccaagcagcacgactgactttaacgaggtgatc
agtgttctggacgcgtccctacccgacagcacctggacctttgagagccagcagcaaaag
cctcccaacaatgactggcgcgtcacacagggaccgagacctggacctagtggtccccac
atgccatacggtacacacatacgatggacgccgaagagtgggacaagtgcaactggagga
cctgaggttgccatgggaactggcccttggccccaaccccccactgaggccgagcagctt
caggccctgatggctgcagccaacggcgaggctacggccacactgggacccggcaccatg
ggcctgagcacccgctacagcccccagttcaccctgcagcacgtgcccgactatcgccag
aacgtctacatccccgggagcacggccactctaacctccaacccccagcagcagcaggcc
acggcccagcaggcggcccagcaggcggcccagcaggcggcccagcagcaggcggcccag
cagcaggcggcccagcagcaggcggcccagcaggcgctgcctccggcccaggtcttggtc
cagcccgagcctccaaaggccgcccagacccctgcctccaagaagaagtccaccaagaag
gagaagaagtag
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