Pseudoliparis swirei (Mariana hadal snailfish): 130209922
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Entry
130209922 CDS
T09868
Symbol
ptcd3
Name
(RefSeq) LOW QUALITY PROTEIN: pentatricopeptide repeat domain-containing protein 3, mitochondrial
KO
K17659
pentatricopeptide repeat domain-containing protein 3
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03029 Mitochondrial biogenesis [BR:
pswi03029
]
130209922 (ptcd3)
Mitochondrial biogenesis [BR:
pswi03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
130209922 (ptcd3)
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Gene cluster
GFIT
Motif
Pfam:
Rib_mS39_PPR
PPR_2
PPR_3
PPR_long
TPR_24
BARF1_ig2
Motif
Other DBs
NCBI-GeneID:
130209922
NCBI-ProteinID:
XP_056295821
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All DBs
Position
19:6586071..6595515
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AA seq
682 aa
AA seq
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MVSPSQKPSVRNNMAAPGRHVGHYIQRNSRFLRNGIEQLWSHRSFGWTPALRQQAAEANK
DSTDAFLIPRKKTWSKEAVLEALASTVGRDPTAHPYHFQDDPYLSPRTSSEFRLFSLSLE
SGRSAAKYFVNSNPKFFTTDFAEPHIPCLMPESVTPLLEETSEEALKERISLRKVTAAVD
MYDQLLQSGTAVSMETTHGLLDLICLYCDRDPVQEGGQQAEDAEESEEEVRRRKGRFRRT
SHMLRFTWKENSNAERIFNLLPERDTRCFSALIRGMVKHGASAKAYSKYTDMLNNRVTAD
VHIFNALVSAAPDLRDKYNERWELITELLNQMNQQKVQPNLLTFNSVLKALRRCGFLAKT
QAMYILNEMKAMGIAPSLASFDHILAVFSKAASSGQGSTDILQEVMSVLGKNSFICQDPN
DVLFFTTAMRICLDNKDLELGYKIQSLVEHGENWRLLGDSYQQSIYYGRFFNLLCMMEHI
DVVLKWYRRLIPSLYYPNPQGLKDLLQALDTDSRLDMLPTIWKDIRSLGHDNKTDLVEEL
LALMARDRHSPEVQEAFAACALDVKSAFGGNRGKISLEWSSASLSHITSLLLRANKTPQA
WEMLQLFESKNRVPNDGLLDDFLSACCGGSSPQKAVELVQMSAAFGLPATARLAKRTLAE
FQVTEEQRAVLSELEATGETSD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggtttctccctcccagaagccttcagtgcgtaacaacatggcggcgcccggacggcac
gtagggcattatattcaaagaaacagccgatttttaagaaatggtatcgagcagctatgg
agtcacaggagttttggttggactccagctctgcgacaacaagctgcagaagctaacaaa
gattctacagatgcgtttctcatccccaggaagaaaacctggagcaaggaggcagtgctg
gaggctctggcgtctactgtcggcagggatcccacagcacacccctaccacttccaggat
gacccttacctctctcctaggacctcctctgagtttaggctgttctcgctctctctagag
tctggcaggtccgcggccaaatactttgtcaacagcaatcccaagttcttcaccacagac
tttgctgaaccacacataccctgtctgatgccagagagtgtgacgccgctcctcgaggag
acgagtgaggaggcgctcaaggaacgaatcagcttgaggaaagttacagccgctgtcgac
atgtacgaccaactgttgcaatctggcaccgcggtctccatggaaacgacccatgggttg
ttagacctgatctgtctctactgtgacagagacccggtccaggagggaggacagcaggct
gaggacgcggaggagtcggaagaggaggtgaggagacggaaagggaggtttcgtcggact
tcccacatgctgagattcacctggaaggagaactccaacgcagagaggatcttcaacctg
ctgcccgagcgagacacgcgctgcttctcagctctgatcaggggcatggtgaagcacgga
gcctccgcaaaggcctacagcaagtacaccgacatgctgaacaacagagtgacagctgat
gtccacatcttcaacgctctggtgtcagccgctccagacctccgagacaaatacaacgag
agatgggagcttatcactgagttgttgaaccagatgaatcagcagaaagttcagcccaac
cttctcaccttcaacagtgttctcaaagcgctgagacgctgcggctttctcgccaaaaca
caagctatgtacattctgaatgagatgaaggccatgggaatagctccgagtctggcctcc
ttcgaccacatcctggcggtcttttccaaagcagcctcctctggccagggcagcactgac
attttacaggaagtgatgtcagtgctgggaaaaaacagcttcatctgccaggaccccaac
gatgttctattcttcaccactgcgatgagaatatgcctggataataaagatctagagctg
ggttataagatccagagtctagtagaacacggggagaactggaggcttctgggagattcc
taccagcagagtatttattacggtcgtttcttcaacctgctgtgtatgatggagcacatt
gacgtggtgctgaagtggtacaggcggctcattccctcgttgtactacccgaaccctcag
ggactgaaggacctgctgcaggctctggacacagacagtcgcctggacatgctgcccacc
atatggaaggacatccggtctctgggtcacgataacaaaaccgatctggtggaggagctg
ctcgccctgatggccagggaccgacacagtccagaggttcaggaggcgttcgcggcgtgt
gccctggacgtgaagagtgcgttcggtgggaaccgagggaagatcagtctggagtggagc
agcgcctccctctcgcacatcacctccctgctgctgcgagccaacaagaccccgcaggcc
tgggagatgctgcagctcttcgagtccaagaacagagttcccaacgacgggctgctggat
gacttcctgtcggcgtgctgcggcggcagctccccccaaaaagcggtggagctggtccag
atgtccgcagccttcggcctgcctgcaacagcgagactggcaaagaggacgctggccgag
ttccaagtgacggaggagcaaagagcggtgttatctgaactggaggcgacaggagagacc
tctgactga
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